Failed to load module Darwin with root6.24 installed by conda, Venrura13.3.1 and MacOSX13.3.sdk


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_ROOT Version: 6.24
_Platform: macos Ventura 13.3.1
_Compiler: clang version 12.0.1
Target: x86_64-apple-darwin22.4.0


First of all, I apologize for my poor English.
I installed Root 6.24 using a conda environment, but when I type “root,” I encounter the following error:

input_line_1:1:2: error: module 'Darwin' uses additional module map
      '/Library/Developer/CommandLineTools/SDKs/MacOSX13.1.sdk/usr/include/darwin_cdefs.modulemap' used when the
      module was built
#include <new>
 ^
input_line_1:1:2: note: imported by module 'std' in '/Users/shenhuafei/opt/anaconda3/envs/3ML/lib/std.pcm'
Warning in cling::IncrementalParser::CheckABICompatibility():
  Failed to extract C++ standard library version.
Warning in cling::IncrementalParser::CheckABICompatibility():
  Possible C++ standard library mismatch, compiled with _LIBCPP_ABI_VERSION '1'
  Extraction of runtime standard library version was: ''
input_line_2:1:2: fatal error: module file '/Users/shenhuafei/opt/anaconda3/envs/3ML/lib/std.pcm' is out of date and needs to be rebuilt
#include "cling/Interpreter/RuntimeUniverse.h"
 ^
input_line_2:1:2: note: imported by module 'Cling_Runtime_Extra' in '/Users/shenhuafei/opt/anaconda3/envs/3ML/lib/Cling_Runtime_Extra.pcm'
input_line_2:1:2: note: imported by module 'Cling_Runtime' in '/Users/shenhuafei/opt/anaconda3/envs/3ML/lib/Cling_Runtime.pcm'
Replaced symbol atexit cannot be found in JIT!
Replaced symbol at_quick_exit cannot be found in JIT!
<<< cling interactive line includer >>>: fatal error: module file '/Users/shenhuafei/opt/anaconda3/envs/3ML/lib/Darwin.pcm' is out of date and needs to be rebuilt
Failed to load module Darwin
Failed to load module std
Failed to load module _Builtin_intrinsics
Failed to load module ROOT_Foundation_C
Failed to load module ROOT_Config
Failed to load module ROOT_Rtypes
Failed to load module ROOT_Foundation_Stage1_NoRTTI
Failed to load module Core
Failed to load module Rint
Failed to load module RIO
Failed to load module MathCore
Failed to load module Hist
Failed to load module Darwin
Failed to load module Unfold
Failed to load module Imt
Failed to load module HistPainter
Failed to load module PyMVA
Failed to load module RDAVIX
Failed to load module ROOTBrowsable
Failed to load module RHTTP
Failed to load module FitPanel
Failed to load module ROOTVecOps
Failed to load module ProofDraw
Failed to load module RHTTPSniff
Failed to load module Quadp
Failed to load module ROOT_Foundation_Stage1_NoRTTI
Failed to load module GeomPainter
Failed to load module Genetic
Failed to load module Eve
Failed to load module TreeViewer
Failed to load module Physics
Failed to load module ROOTNTuple
Failed to load module EG
Failed to load module Tree
Failed to load module HistFactory
Failed to load module Spectrum
Failed to load module Matrix
Failed to load module Html
Failed to load module Hist
Failed to load module GuiHtml
Failed to load module _Builtin_intrinsics
Failed to load module Gpad
Failed to load module TMVAGui
Failed to load module ROOTEve
Failed to load module Fumili
Failed to load module Net
Failed to load module RGL
Failed to load module Geom
Failed to load module Postscript
Failed to load module GCocoa
Failed to load module ROOTGpadv7
Failed to load module RCsg
Failed to load module Cling_Runtime
Failed to load module SPlot
Failed to load module EGPythia8
Failed to load module GeomBuilder
Failed to load module RooFit
Failed to load module ROOT_Config
Failed to load module RooFitMore
Failed to load module Rint
Failed to load module XMLParser
Failed to load module MultiProc
Failed to load module RooStats
Failed to load module Proof
Failed to load module FITSIO
Failed to load module Ged
Failed to load module Recorder
Failed to load module FFTW
Failed to load module GuiBld
Failed to load module Vc
Failed to load module ROOTWebDisplay
Failed to load module RooFitCore
Failed to load module Gui
Failed to load module SQLIO
Failed to load module XMLIO
Failed to load module ROOT_Rtypes
Failed to load module std
Failed to load module ROOTHistDraw
Failed to load module RIO
Failed to load module ProofPlayer
Failed to load module ASImage
Failed to load module ROOT_Foundation_C
Failed to load module MathMore
Failed to load module Foam
Failed to load module RSQLite
Failed to load module SpectrumPainter
Failed to load module Minuit2
Failed to load module Core
Failed to load module MLP
Failed to load module ROOTDataFrame
Failed to load module GenVector
Failed to load module NetxNG
Failed to load module ROOTBrowserv7
Failed to load module Minuit
Failed to load module RootAuth
Failed to load module Graf3d
Failed to load module TMVA
Failed to load module ASImageGui
Failed to load module Graf
Failed to load module Gdml
Failed to load module ProofBench
Failed to load module Cling_Runtime_Extra
Failed to load module MathCore
Failed to load module Gviz3d
Failed to load module WebGui6
Failed to load module ROOTTPython
Failed to load module ROOTHist
Failed to load module TreePlayer
Failed to load module ROOTGraphicsPrimitives
Failed to load module Gviz
Failed to load module ROOTFitPanelv7
Failed to load module Smatrix
Failed to load module SessionViewer
Failed to load module Thread
Assertion failed: (clingInterp.getMacro("gROOT") && "Couldn't load gROOT macro?"), function RegisterCxxModules, file /Users/runner/miniforge3/conda-bld/root_base_1649937584779/work/root-source/core/metacling/src/TCling.cxx, line 1313.

I have tried many solutions, such as updating conda, clearing the cache of conda, cleaning and reinstalling Xcode, and changing the version of SDK I use. However, the oldest version I can use is 13.1, and none of these solutions have worked. Other versions of Root, such as brew root and other conda root, work well. Only Root 6.24 has this problem. However, I need to use threeML and root_numpy, so only this version of Root is suitable for me.

I have spent a lot of time on this issue and can’t move forward. I hope someone can help me. Thank you very much!

It looks like RIOOT is looking in MacOSX13.1.sdk while your system is 13.3.1, so that’s maybe the issue? I’m not a MacOS user, so maybe @Axel or @couet can help

Thanks, I have tried changing the SDK to 13.3, 13.1, and 12.3, but none of these solutions worked.

Maybe you need a more recent version of ROOT

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You cannot use ROOT 6.24 on the newest macOS with the newest Xcode; Apple introduced too many breaking changes. I will be releasing 6.28/04 hopefully still this week which will address those.