After trying to successfully rebuild root from source after updating my OS this is the solution that worked for me.
Hi,
I am just trying to compile ROOT 6.26/04 on Debian testing (bookworm) and unfortunately it crashes with an issue w.r.t. to RInt.pcm:
[84%] Generating G__Rint.cxx, ../../lib/Rint.pcm
Scanning dependencies of target G__Rint
[ 84%] Building CXX object core/rint/CMakeFiles/G__Rint.dir/G__Rint.cxx.o
[ 84%] Built target G__Rint
[ 84%] Building CXX object core/rint/CMakeFiles/Rint.dir/src/TRint.cxx.o
[ 84%] Building CXX object core/rint/CMakeFiles/Rint.dir/src/TTabCom.cxx.o
[ 84%] Linking CXX shared library ../../lib/libRint.so
[ 84%] Built target Rint
[ 84%] Generating G__MathMore.cxx, ../../lib/MathMore.pcm
<<< cling interactive line includer >>>: fatal error: module file '/products/src.ROOT/root_build/v6-26-04/lib/Rint.pcm' is out of date and needs to be rebuilt: could not read module signature
<<< cling interactive line includer >>>: note: imported by module 'MathCore' in '/products/src.ROOT/root_build/v6-26-04/lib/MathCore.pcm'
Error: Module 'MathCore.pcm' failed to load.
Error: Error loading the default rootcling header files.
gmake[2]: *** [math/mathmore/CMakeFiles/G__MathMore.dir/build.make:142: math/mathmore/G__MathMore.cxx] Error 1
gmake[1]: *** [CMakeFiles/Makefile2:26638: math/mathmore/CMakeFiles/G__MathMore.dir/all] Error 2
gmake: *** [Makefile:156: all] Error 2
Any advice for a work-around?
Thank you,
w.w.
Hi,
trying to compile again with the recent ROOT 6.26/06 on Debian testing (bookworm) it crashes with the same issue w.r.t. RInt.pcm being out-of-date. However, removing all *.pcm files and then running make -j6 successfully completes the build. Thanks for the hint above.
Thanks for continuing to investigate the issue,
w.w.
1 Like
FYI I just hit the same issue on latest root master on my Fedora 35.
I first tried rm lib/*.pcm as @Axel suggested. Then cmaking however failed with a similar error - in particular the old error plus:
gmake[2]: *** [sql/mysql/CMakeFiles/G__RMySQL.dir/build.make:88: sql/mysql/G__RMySQL.cxx] Error 1
gmake[2]: *** [io/sql/CMakeFiles/G__SQLIO.dir/build.make:91: io/sql/G__SQLIO.cxx] Error 1
gmake[1]: *** [CMakeFiles/Makefile2:41433: sql/mysql/CMakeFiles/G__RMySQL.dir/all] Error 2
gmake[1]: *** Waiting for unfinished jobs....
gmake[1]: *** [CMakeFiles/Makefile2:35775: io/sql/CMakeFiles/G__SQLIO.dir/all] Error 2
[ 75%] Built target unordered_mapDict
<<< cling interactive line includer >>>: remark: building module 'MultiProc' as '[...]/rb/lib/MultiProc.pcm' [-Rmodule-build]
Error: Building module 'MultiProc' implicitly. If 'MultiProc' requires a
dictionary please specify build dependency: 'G__Imt.cxx' depends on 'MultiProc'.
Otherwise, specify '-mByproduct MultiProc' to disable this diagnostic.
Subprocess aborted
gmake[2]: *** [net/auth/CMakeFiles/G__RootAuth.dir/build.make:89: net/auth/G__RootAuth.cxx] Error 1
gmake[1]: *** [CMakeFiles/Makefile2:36142: net/auth/CMakeFiles/G__RootAuth.dir/all] Error 2
Subprocess aborted
Then, I applyed @eguiraud 's suggestion to delete all .pcm files (i.e. find . -name "*.pcm" -type f -delete), then cmake was successful.
I never changed the number of cores in cmake - always entering -j32.
I am still facing this error when building on the current master branch. Can someone help with it?
How did you start the build (exact commad line)?
cmake -Dtesting=ON -Droottest=ON roottest -Dtmva-sofie=ON -Dbuiltin_xrootd=ON -DPython3_EXECUTABLE=python3 -DPython2_EXECUTABLE=python -DCMAKE_INSTALL_PREFIX=../install ../root
cmake --build . --target install
I got the following error
<<< cling interactive line includer >>>: fatal error: module file '/home/neel/Desktop/Root/build/lib/Rint.pcm' is out of date and needs to be rebuilt: could not read module signature
<<< cling interactive line includer >>>: note: imported by module 'MathCore' in '/home/neel/Desktop/Root/build/lib/MathCore.pcm'
Error: Module 'MathCore.pcm' failed to load.
Error: Error loading the default rootcling header files.
make[2]: *** [math/mathmore/CMakeFiles/G__MathMore.dir/build.make:130: math/mathmore/G__MathMore.cxx] Error 1
make[1]: *** [CMakeFiles/Makefile2:36652: math/mathmore/CMakeFiles/G__MathMore.dir/all] Error 2
make: *** [Makefile:163: all] Error 2
Getting a similar kind of error since recently on my Mac as well. Using a custom ROOT build that was working fine a week ago, but trying to run the root executable now results in the following error message (results in a segfault):
input_line_1:1:2: error: module 'Darwin' uses additional module map
'/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/_types.modulemap' used when the module was
built
#include <new>
^
input_line_1:1:2: note: imported by module 'std' in '/Users/ahmadh/biodynamo/build/third_party/root/lib/std.pcm'
Warning in cling::IncrementalParser::CheckABICompatibility():
Failed to extract C++ standard library version.
Warning in cling::IncrementalParser::CheckABICompatibility():
Possible C++ standard library mismatch, compiled with _LIBCPP_ABI_VERSION '1'
Extraction of runtime standard library version was: ''
input_line_2:1:2: fatal error: module file '/Users/ahmadh/biodynamo/build/third_party/root/lib/std.pcm' is out of date and needs to be rebuilt
#include "cling/Interpreter/RuntimeUniverse.h"
^
input_line_2:1:2: note: imported by module 'Cling_Runtime_Extra' in '/Users/ahmadh/biodynamo/build/third_party/root/lib/Cling_Runtime_Extra.pcm'
input_line_2:1:2: note: imported by module 'Cling_Runtime' in '/Users/ahmadh/biodynamo/build/third_party/root/lib/Cling_Runtime.pcm'
Replaced symbol atexit cannot be found in JIT!
Replaced symbol at_quick_exit cannot be found in JIT!
<<< cling interactive line includer >>>: fatal error: module file '/Users/ahmadh/biodynamo/build/third_party/root/lib/Darwin.pcm' is out of date and needs to be rebuilt
I have the feeling something with the standard C++ libs has changed on my machine, but I am not aware of any updates. Perhaps something changed in the background
Edit: I haven’t tried rebuilding with deleting the *.pcm files yet, but it is strange to me that these PCM files got invalidated suddenly.
This looks like a different error on a different platform. Can you open a different thread to keep this one focused on the original problem?
Hello @pcanal I tried the solution provided by you but i am still facing that issue.
Can you suggest some other solution?
Hello @Neel_Shah
I think you are facing this open issue (C++ modules: dependency issue on out of date Rint.pcm · Issue #10271 · root-project/root · GitHub).
Which platform are you using it ?
@vvassilev do you know what is causing this ?
Lorenzo
This is pretty much my development platform and I do not encounter this problem.
Can you please start from scratch and send us:
- The complete cmake command use to configure
- The complete output of that cmake command
- The complete output of building with
cmake --build . --target install -- -j 1(or simplymake).
Hello @pcanal @moneta here are the outputs.
The complete cmake command use to configure
cmake -Dtesting=ON -Droottest=ON roottest -Dtmva-sofie=ON -Dbuiltin_xrootd=ON -DPython3_EXECUTABLE=python3 -DPython2_EXECUTABLE=python -DCMAKE_INSTALL_PREFIX=../install ../root
The complete output of that cmake command
(base) neel@neel-ASUS-TUF-Gaming-A15-FA506QM-FA506QM:~/Desktop/Root/build$ cmake -Dtesting=ON -Droottest=ON roottest -Dtmva-sofie=ON -Dbuiltin_xrootd=ON -DPython3_EXECUTABLE=python3 -DPython2_EXECUTABLE=python -DCMAKE_INSTALL_PREFIX=../install ../root
-- Detected ROOT_VERSION 6.27.01
-- Checking internet connectivity...
-- Yes
-- Looking for Python
-- Could NOT find Python2 (missing: Python2_EXECUTABLE Interpreter NumPy) (found version "2.7")
-- Found GCC. Major version 9, minor version 4
-- ROOT Platform: linux
-- ROOT Compiler: GNU 9.4.0
-- ROOT Processor: x86_64
-- ROOT Architecture: linuxx8664gcc
-- Build Type: 'Release' (flags = '-O3 -DNDEBUG')
-- Compiler Flags: -std=c++14 -Wno-implicit-fallthrough -Wno-noexcept-type -pipe -Wshadow -Wall -W -Woverloaded-virtual -fsigned-char -pthread -O3 -DNDEBUG
-- ROOT default compression algorithm: zlib
-- PyROOT will be built for version 3.7.6
-- Looking for ZLib
-- Looking for Freetype
-- Looking for PCRE
-- Building LZMA version 5.2.4 included in ROOT itself
-- Looking for X11
-- Could NOT find GIF (missing: GIF_LIBRARY GIF_INCLUDE_DIR)
-- Could NOT find TIFF (missing: TIFF_LIBRARY TIFF_INCLUDE_DIR)
-- Building AfterImage library included in ROOT itself
-- Looking for GSL
-- Looking for OpenGL
-- Looking for GLEW
-- Looking for LibXml2
-- Looking for MySQL
-- Looking for FFTW3
-- Looking for CFITSIO
-- Downloading and building XROOTD version 5.5.1
-- Looking for libuuid
-- Looking for VDT
-- Looking for Protobuf
-- Cannot select cudnn without selecting cuda or tmva-gpu. Option is ignored
-- Looking for BLAS for optional parts of TMVA
-- Building LLVM in 'Release' mode.
-- Could NOT find Z3: Found unsuitable version "0.0.0", but required is at least "4.7.1" (found Z3_LIBRARIES-NOTFOUND)
-- Native target architecture is X86
-- Threads disabled.
-- Doxygen disabled.
-- Go bindings disabled.
-- Could NOT find OCaml (missing: OCAMLFIND OCAML_VERSION OCAML_STDLIB_PATH)
-- OCaml bindings disabled.
-- LLVM host triple: x86_64-unknown-linux-gnu
-- LLVM default target triple: x86_64-unknown-linux-gnu
-- Building with -fPIC
-- Constructing LLVMBuild project information
-- Linker detection: GNU ld
-- Targeting X86
-- Targeting NVPTX
-- Clang version: 9.0.1
-- Cling version (from VERSION file): ROOT_1.0~dev
-- Cling will look for C++ headers in '/usr/include/c++/9:/usr/include/x86_64-linux-gnu/c++/9:/usr/include/c++/9/backward' at runtime.
-- And then fallback to: 'x86_64-linux-gnu-g++-9'
-- Use SSL API VERSION 1.1 for civetweb
-- Requirements to enable distributed RDataFrame:
-- dataframe: required:ON, actual:ON
-- Python version: required:>=3.8, actual:3.7.6
-- Performing Test found_stdstringview
-- Performing Test found_stdstringview - Failed
-- Performing Test found_stdexpstringview
-- Performing Test found_stdexpstringview - Success
-- Performing Test found_stod_stringview
-- Performing Test found_stod_stringview - Failed
-- Performing Test found_stdapply
-- Performing Test found_stdapply - Failed
-- Performing Test found_stdinvoke
-- Performing Test found_stdinvoke - Failed
-- Performing Test found_stdindexsequence
-- Performing Test found_stdindexsequence - Success
-- 585/841 C++ tutorials have been activated.
-- 186/230 python tutorials have been activated.
-- Check for bitness: Found 64 bit architecture.
-- Scanning subdirectories for tests...
-- ROOT Configuration
System Linux-5.15.0-52-generic
Processor 8 core AMD Ryzen 9 5900HX with Radeon Graphics (x86_64)
Build type Release
Install path /home/neel/Desktop/Root/install
Compiler GNU 9.4.0
Compiler flags:
C -Wno-implicit-fallthrough -pipe -Wall -W -pthread -O3 -DNDEBUG
C++ -std=c++14 -Wno-implicit-fallthrough -Wno-noexcept-type -pipe -Wshadow -Wall -W -Woverloaded-virtual -fsigned-char -pthread -O3 -DNDEBUG
Linker flags:
Executable -rdynamic
Module
Shared -Wl,--no-undefined -Wl,--hash-style="both"
-- Enabled support for: asimage builtin_afterimage builtin_clang builtin_cling builtin_gl2ps builtin_llvm builtin_lz4 builtin_lzma builtin_nlohmannjson builtin_openui5 builtin_tbb builtin_xrootd builtin_xxhash builtin_zstd clad dataframe exceptions fftw3 fitsio gdml http imt mathmore mlp minuit2 mysql opengl pyroot roofit rpath runtime_cxxmodules shared ssl tmva tmva-cpu tmva-sofie tmva-pymva spectrum vdt x11 xml xrootd
-- Configuring done
-- Generating done
-- Build files have been written to: /home/neel/Desktop/Root/build
The complete output of building with cmake --build . --target install -- -j 1 (or simply make).
(base) neel@neel-ASUS-TUF-Gaming-A15-FA506QM-FA506QM:~/Desktop/Root/build$ cmake --build . --target install -- -j 1
[ 0%] Built target TBB
[ 0%] Built target AFTERIMAGE
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Scanning dependencies of target G__Thread
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[ 46%] Generating G__RIO.cxx, ../../lib/RIO.pcm
Scanning dependencies of target G__RIO
[ 46%] Building CXX object io/io/CMakeFiles/G__RIO.dir/G__RIO.cxx.o
[ 46%] Built target G__RIO
[ 46%] Linking CXX shared library ../../lib/libRIO.so
[ 46%] Built target RIO
[ 46%] Generating G__complexDict.cxx, ../../lib/libcomplexDict.rootmap
Scanning dependencies of target G__complexDict
[ 46%] Building CXX object core/clingutils/CMakeFiles/G__complexDict.dir/G__complexDict.cxx.o
[ 46%] Built target G__complexDict
[ 46%] Linking CXX shared library ../../lib/libcomplexDict.so
[ 46%] Built target complexDict
[ 46%] Built target MetaCling
[ 46%] Built target clad
[ 46%] Built target Cling
[ 46%] Linking CXX executable ../bin/rootcling
[ 46%] Built target rootcling
[ 46%] Generating G__RooFitHS3.cxx, ../../lib/RooFitHS3.pcm
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[ 46%] Building CXX object roofit/hs3/CMakeFiles/G__RooFitHS3.dir/G__RooFitHS3.cxx.o
[ 46%] Built target G__RooFitHS3
[ 46%] Generating G__Net.cxx, ../../lib/Net.pcm
Scanning dependencies of target G__Net
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[ 46%] Built target G__Net
[ 46%] Linking CXX shared library ../../lib/libNet.so
[ 46%] Built target Net
[ 46%] Generating G__MultiProc.cxx, ../../lib/MultiProc.pcm
Scanning dependencies of target G__MultiProc
[ 46%] Building CXX object core/multiproc/CMakeFiles/G__MultiProc.dir/G__MultiProc.cxx.o
[ 46%] Built target G__MultiProc
[ 46%] Linking CXX shared library ../../lib/libMultiProc.so
[ 47%] Built target MultiProc
[ 47%] Generating G__Imt.cxx, ../../lib/Imt.pcm
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[ 47%] Building CXX object core/imt/CMakeFiles/G__Imt.dir/G__Imt.cxx.o
[ 47%] Built target G__Imt
[ 47%] Linking CXX shared library ../../lib/libImt.so
[ 47%] Built target Imt
[ 47%] Generating G__MathCore.cxx, ../../lib/MathCore.pcm
Scanning dependencies of target G__MathCore
[ 47%] Building CXX object math/mathcore/CMakeFiles/G__MathCore.dir/G__MathCore.cxx.o
[ 47%] Built target G__MathCore
[ 47%] Linking CXX shared library ../../lib/libMathCore.so
[ 48%] Built target MathCore
[ 48%] Generating G__Matrix.cxx, ../../lib/Matrix.pcm
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[ 48%] Building CXX object math/matrix/CMakeFiles/G__Matrix.dir/G__Matrix.cxx.o
[ 48%] Built target G__Matrix
[ 48%] Linking CXX shared library ../../lib/libMatrix.so
[ 48%] Built target Matrix
[ 48%] Built target mathtext
[ 48%] Generating G__Hist.cxx, ../../lib/Hist.pcm
Scanning dependencies of target G__Hist
[ 48%] Building CXX object hist/hist/CMakeFiles/G__Hist.dir/G__Hist.cxx.o
[ 48%] Built target G__Hist
[ 48%] Linking CXX shared library ../../lib/libHist.so
[ 49%] Built target Hist
[ 49%] Generating G__Graf.cxx, ../../lib/Graf.pcm
Scanning dependencies of target G__Graf
[ 49%] Building CXX object graf2d/graf/CMakeFiles/G__Graf.dir/G__Graf.cxx.o
[ 49%] Built target G__Graf
[ 49%] Linking CXX shared library ../../lib/libGraf.so
[ 50%] Built target Graf
[ 50%] Generating G__Minuit.cxx, ../../lib/Minuit.pcm
Scanning dependencies of target G__Minuit
[ 50%] Building CXX object math/minuit/CMakeFiles/G__Minuit.dir/G__Minuit.cxx.o
[ 50%] Built target G__Minuit
[ 50%] Linking CXX shared library ../../lib/libMinuit.so
[ 50%] Built target Minuit
[ 50%] Generating G__Minuit2.cxx, ../../lib/Minuit2.pcm
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[ 50%] Building CXX object math/minuit2/CMakeFiles/G__Minuit2.dir/G__Minuit2.cxx.o
[ 50%] Built target G__Minuit2
[ 50%] Linking CXX shared library ../../lib/libMinuit2.so
[ 50%] Built target Minuit2
[ 50%] Generating G__Foam.cxx, ../../lib/Foam.pcm
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[ 50%] Built target G__Foam
[ 50%] Linking CXX shared library ../../lib/libFoam.so
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[ 50%] Generating G__Smatrix32.cxx, ../../lib/libSmatrix32.rootmap
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[ 50%] Built target G__Smatrix
[ 50%] Linking CXX shared library ../../lib/libSmatrix.so
[ 50%] Built target Smatrix
[ 50%] Generating G__Tree.cxx, ../../lib/Tree.pcm
Scanning dependencies of target G__Tree
[ 50%] Building CXX object tree/tree/CMakeFiles/G__Tree.dir/G__Tree.cxx.o
[ 50%] Built target G__Tree
[ 50%] Linking CXX shared library ../../lib/libTree.so
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[ 51%] Generating G__Gpad.cxx, ../../lib/Gpad.pcm
Scanning dependencies of target G__Gpad
[ 51%] Building CXX object graf2d/gpad/CMakeFiles/G__Gpad.dir/G__Gpad.cxx.o
[ 51%] Built target G__Gpad
[ 51%] Linking CXX shared library ../../lib/libGpad.so
[ 51%] Built target Gpad
[ 51%] Generating G__RooFitCore.cxx, ../../lib/RooFitCore.pcm
Scanning dependencies of target G__RooFitCore
[ 51%] Building CXX object roofit/roofitcore/CMakeFiles/G__RooFitCore.dir/G__RooFitCore.cxx.o
[ 51%] Built target G__RooFitCore
[ 51%] Linking CXX shared library ../../lib/libRooBatchCompute.so
[ 51%] Built target RooBatchCompute
[ 51%] Linking CXX shared library ../../lib/libRooFitCommon.so
[ 51%] Built target RooFitCommon
[ 51%] Linking CXX shared library ../../lib/libRooFitCore.so
[ 53%] Built target RooFitCore
[ 53%] Generating G__RooFit.cxx, ../../lib/RooFit.pcm
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[ 53%] Building CXX object roofit/roofit/CMakeFiles/G__RooFit.dir/G__RooFit.cxx.o
[ 53%] Built target G__RooFit
[ 53%] Linking CXX shared library ../../lib/libRooFit.so
[ 54%] Built target RooFit
[ 54%] Generating G__RooStats.cxx, ../../lib/RooStats.pcm
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[ 54%] Building CXX object roofit/roostats/CMakeFiles/G__RooStats.dir/G__RooStats.cxx.o
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[ 56%] Generating G__HistFactory.cxx, ../../lib/HistFactory.pcm
Scanning dependencies of target G__HistFactory
[ 56%] Building CXX object roofit/histfactory/CMakeFiles/G__HistFactory.dir/G__HistFactory.cxx.o
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[ 56%] Generating G__XMLParser.cxx, ../../lib/XMLParser.pcm
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[ 56%] Building CXX object io/xmlparser/CMakeFiles/G__XMLParser.dir/G__XMLParser.cxx.o
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[ 56%] Linking CXX shared library ../../lib/libXMLParser.so
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[ 56%] Linking CXX shared library ../../lib/libHistFactory.so
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[ 56%] Linking CXX shared library ../../lib/libRooFitHS3.so
[ 56%] Built target RooFitHS3
[ 79%] Built target move_artifacts
[ 79%] Generating G__map2Dict.cxx, ../../lib/libmap2Dict.rootmap
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[ 79%] Linking CXX shared library ../../lib/libmap2Dict.so
[ 79%] Built target map2Dict
[ 79%] Generating G__forward_listDict.cxx, ../../lib/libforward_listDict.rootmap
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[ 79%] Generating G__dequeDict.cxx, ../../lib/libdequeDict.rootmap
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[ 79%] Generating G__vectorDict.cxx, ../../lib/libvectorDict.rootmap
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[ 79%] Generating G__setDict.cxx, ../../lib/libsetDict.rootmap
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[ 79%] Generating G__mapDict.cxx, ../../lib/libmapDict.rootmap
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[ 79%] Generating G__unordered_multisetDict.cxx, ../../lib/libunordered_multisetDict.rootmap
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[ 79%] Built target unordered_multisetDict
[ 79%] Generating G__Rint.cxx, ../../lib/Rint.pcm
Scanning dependencies of target G__Rint
[ 79%] Building CXX object core/rint/CMakeFiles/G__Rint.dir/G__Rint.cxx.o
[ 79%] Built target G__Rint
[ 79%] Linking CXX shared library ../../lib/libRint.so
[ 79%] Built target Rint
[ 79%] Generating G__MathMore.cxx, ../../lib/MathMore.pcm
<<< cling interactive line includer >>>: fatal error: module file '/home/neel/Desktop/Root/build/lib/Rint.pcm' is out of date and needs to be rebuilt: could not read module signature
<<< cling interactive line includer >>>: note: imported by module 'MathCore' in '/home/neel/Desktop/Root/build/lib/MathCore.pcm'
Error: Module 'MathCore.pcm' failed to load.
Error: Error loading the default rootcling header files.
make[2]: *** [math/mathmore/CMakeFiles/G__MathMore.dir/build.make:130: math/mathmore/G__MathMore.cxx] Error 1
make[1]: *** [CMakeFiles/Makefile2:36542: math/mathmore/CMakeFiles/G__MathMore.dir/all] Error 2
make: *** [Makefile:163: all] Error 2
Please let me know the issue and the solution for the error. Thanks a lot!
From the output is seems like you did not start from an empty directory but reconfigure/rebuild an existing directory. Please start against after deleting and creating the ~/Desktop/Root/build directory.
Hello @pcanal Here is the output of fresh build. Getting the same error
The complete cmake command use to configure
cmake -Dtesting=ON -Droottest=ON roottest -Dtmva-sofie=ON -Dbuiltin_xrootd=ON -DPython3_EXECUTABLE=python3 -DPython2_EXECUTABLE=python -DCMAKE_INSTALL_PREFIX=../install ../root
The complete output of that cmake command
(base) neel@neel-ASUS-TUsF-Gaming-A15-FA506QM-FA506QM:~$ cd Desktop/Root/
(base) neel@neel-ASUS-TUF-Gaming-A15-FA506QM-FA506QM:~/Desktop/Root$ mkdir build
(base) neel@neel-ASUS-TUF-Gaming-A15-FA506QM-FA506QM:~/Desktop/Root$ cd build/
(base) neel@neel-ASUS-TUF-Gaming-A15-FA506QM-FA506QM:~/Desktop/Root/build$ cmake -Dtesting=ON -DLLVM_INCLUDE_TESTS=OFF -Droottest=ON roottest -Dtmva-sofie=ON -Dbuiltin_xrootd=ON -DPython3_EXECUTABLE=python3 -DPython2_EXECUTABLE=python -DCMAKE_INSTALL_PREFIX=../install ../root
-- The C compiler identification is GNU 9.4.0
-- The CXX compiler identification is GNU 9.4.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found Git: /usr/local/bin/git (found version "2.26.2")
-- Detected ROOT_VERSION 6.27.01
-- Checking internet connectivity...
-- Yes
-- Looking for Python
-- Found Python3: /home/neel/anaconda3/bin/python3.7 (found version "3.7.6") found components: Interpreter Development NumPy
-- Could NOT find Python2 (missing: Python2_EXECUTABLE Interpreter NumPy) (found version "2.7")
-- Found GCC. Major version 9, minor version 4
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Performing Test GLIBCXX_USE_CXX11_ABI
-- Performing Test GLIBCXX_USE_CXX11_ABI - Success
-- ROOT Platform: linux
-- ROOT Compiler: GNU 9.4.0
-- ROOT Processor: x86_64
-- ROOT Architecture: linuxx8664gcc
-- Build Type: 'Release' (flags = '-O3 -DNDEBUG')
-- Compiler Flags: -std=c++14 -Wno-implicit-fallthrough -Wno-noexcept-type -pipe -Wshadow -Wall -W -Woverloaded-virtual -fsigned-char -pthread -O3 -DNDEBUG
-- ROOT default compression algorithm: zlib
-- PyROOT will be built for version 3.7.6
-- Looking for ZLib
-- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11")
-- Looking for nlohmann/json.hpp
-- nlohmann/json.hpp not found. Switching on builtin_nlohmannjson option
-- Looking for Freetype
-- Found Freetype: /usr/lib/x86_64-linux-gnu/libfreetype.so (found version "2.10.1")
-- Looking for PCRE
-- Found PCRE: /usr/include (found version "8.44")
-- Looking for LZMA
-- Could NOT find LibLZMA (missing: LIBLZMA_LIBRARY LIBLZMA_INCLUDE_DIR LIBLZMA_HAS_AUTO_DECODER LIBLZMA_HAS_EASY_ENCODER LIBLZMA_HAS_LZMA_PRESET)
-- LZMA not found. Switching on builtin_lzma option
-- Building LZMA version 5.2.4 included in ROOT itself
-- Looking for xxHash
-- Could NOT find xxHash (missing: xxHash_LIBRARY xxHash_INCLUDE_DIR)
-- xxHash not found. Switching on builtin_xxhash option
-- Looking for ZSTD
-- Could NOT find ZSTD (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR ZSTD_VERSION)
-- ZSTD not found. Switching on builtin_zstd option
-- Performing Test CXX_FLAG_STD_CPLUSPLUS11
-- Performing Test CXX_FLAG_STD_CPLUSPLUS11 - Success
-- Performing Test C_FLAG_STD_C99
-- Performing Test C_FLAG_STD_C99 - Success
-- Performing Test C_FLAG_WALL
-- Performing Test C_FLAG_WALL - Success
-- Performing Test CXX_FLAG_WALL
-- Performing Test CXX_FLAG_WALL - Success
-- Performing Test C_FLAG_WEXTRA
-- Performing Test C_FLAG_WEXTRA - Success
-- Performing Test CXX_FLAG_WEXTRA
-- Performing Test CXX_FLAG_WEXTRA - Success
-- Performing Test C_FLAG_WUNDEF
-- Performing Test C_FLAG_WUNDEF - Success
-- Performing Test CXX_FLAG_WUNDEF
-- Performing Test CXX_FLAG_WUNDEF - Success
-- Performing Test C_FLAG_WSHADOW
-- Performing Test C_FLAG_WSHADOW - Success
-- Performing Test CXX_FLAG_WSHADOW
-- Performing Test CXX_FLAG_WSHADOW - Success
-- Performing Test C_FLAG_WCAST_ALIGN
-- Performing Test C_FLAG_WCAST_ALIGN - Success
-- Performing Test CXX_FLAG_WCAST_ALIGN
-- Performing Test CXX_FLAG_WCAST_ALIGN - Success
-- Performing Test C_FLAG_WCAST_QUAL
-- Performing Test C_FLAG_WCAST_QUAL - Success
-- Performing Test CXX_FLAG_WCAST_QUAL
-- Performing Test CXX_FLAG_WCAST_QUAL - Success
-- Performing Test C_FLAG_WSTRICT_PROTOTYPES
-- Performing Test C_FLAG_WSTRICT_PROTOTYPES - Success
-- Looking for LZ4
-- Could NOT find LZ4 (missing: LZ4_LIBRARY LZ4_INCLUDE_DIR)
-- LZ4 not found. Switching on builtin_lz4 option
-- Looking for X11
-- Found X11: /usr/include
-- Looking for XOpenDisplay in /usr/lib/x86_64-linux-gnu/libX11.so;/usr/lib/x86_64-linux-gnu/libXext.so
-- Looking for XOpenDisplay in /usr/lib/x86_64-linux-gnu/libX11.so;/usr/lib/x86_64-linux-gnu/libXext.so - found
-- Looking for gethostbyname
-- Looking for gethostbyname - found
-- Looking for connect
-- Looking for connect - found
-- Looking for remove
-- Looking for remove - found
-- Looking for shmat
-- Looking for shmat - found
-- X11_INCLUDE_DIR: /usr/include
-- X11_LIBRARIES: /usr/lib/x86_64-linux-gnu/libX11.so;/usr/lib/x86_64-linux-gnu/libXext.so
-- X11_Xpm_INCLUDE_PATH: /usr/include
-- X11_Xpm_LIB: /usr/lib/x86_64-linux-gnu/libXpm.so
-- X11_Xft_INCLUDE_PATH: /usr/include
-- X11_Xft_LIB: /usr/lib/x86_64-linux-gnu/libXft.so
-- X11_Xext_INCLUDE_PATH: /usr/include
-- X11_Xext_LIB: /usr/lib/x86_64-linux-gnu/libXext.so
-- Could NOT find GIF (missing: GIF_LIBRARY GIF_INCLUDE_DIR)
-- Could NOT find TIFF (missing: TIFF_LIBRARY TIFF_INCLUDE_DIR)
-- Found PNG: /usr/lib/x86_64-linux-gnu/libpng.so (found version "1.6.37")
-- Found JPEG: /usr/lib/x86_64-linux-gnu/libjpeg.so (found version "80")
-- Looking for AfterImage
-- Could NOT find AfterImage (missing: AFTERIMAGE_INCLUDE_DIR AFTERIMAGE_LIBRARIES)
-- AfterImage not found. Switching on builtin_afterimage option
-- Building AfterImage library included in ROOT itself
-- Looking for GSL
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.1")
-- Found GSL: /usr/include (found suitable version "2.5", minimum required is "1.10")
-- Looking for OpenGL
-- Found OpenGL: /usr/lib/x86_64-linux-gnu/libOpenGL.so
-- Looking for GLEW
-- Found GLEW: /usr/include (found version "2.1.0")
-- Looking for gl2ps
-- Could NOT find gl2ps (missing: GL2PS_LIBRARY GL2PS_INCLUDE_DIR)
-- gl2ps not found. Switching on builtin_gl2ps option
-- Looking for LibXml2
-- Found LibXml2: /usr/lib/x86_64-linux-gnu/libxml2.so (found version "2.9.14")
-- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libcrypto.so (found version "1.1.1f")
-- Looking for MySQL
-- Found MySQL: /usr/include/mysql
-- Looking for Oracle
-- Oracle not found.
-- Oracle: You can specify includes: -DORACLE_PATH_INCLUDES=/usr/include/oracle/10.2.0.3/client
-- currently found includes:
-- Oracle: You can specify libs: -DORACLE_PATH_LIB=/usr/lib/oracle/10.2.0.3/client/lib
-- currently found libs: ORACLE_LIBRARY_OCCI-NOTFOUND;ORACLE_LIBRARY_CLNTSH-NOTFOUND;ORACLE_LIBRARY_LNNZ-NOTFOUND
-- Oracle not found. Switching off oracle option
-- Looking for PostgreSQL
-- Could NOT find PostgreSQL (missing: PostgreSQL_LIBRARY PostgreSQL_INCLUDE_DIR)
-- PostgreSQL not found. Switching off pgsql option
-- Looking for SQLite
-- Could NOT find Sqlite (missing: SQLITE_INCLUDE_DIR SQLITE_LIBRARIES)
-- SQLite not found. Switching off sqlite option
-- Looking for Pythia6
-- Pythia6 not found. Switching off pythia6 option
-- Looking for Pythia8
-- Could NOT find Pythia8 (missing: PYTHIA8_INCLUDE_DIR PYTHIA8_LIBRARY)
-- Pythia8 not found. Switching off pythia8 option
-- Looking for FFTW3
-- Found fftw3 includes at /usr/include
-- Found fftw3 library at /usr/lib/x86_64-linux-gnu/libfftw3.so
-- Looking for CFITSIO
-- Found CFITSIO: /usr/lib/x86_64-linux-gnu/libcfitsio.so (found version "3.47")
-- Downloading and building XROOTD version 5.5.1
-- Could NOT find GFAL (missing: GFAL_INCLUDE_DIR SRM_IFCE_INCLUDE_DIR GFAL_LIBRARY)
-- GFAL library not found. Set variable GFAL_DIR to point to your gfal installation
and the variable SRM_IFCE_DIR to the srm_ifce installation
-- For the time being switching OFF 'gfal' option
-- Found FTGL: /usr/include
-- Checking for module 'davix>=0.6.4'
-- No package 'davix' found
-- Looking for uuid_generate_random in uuid
-- Looking for uuid_generate_random in uuid - found
-- Found libuuid: /usr/include
-- Davix dependencies not found, switching OFF 'davix' option.
-- Looking for libuuid
-- Looking for TBB
-- Could NOT find TBB (missing: TBB_ROOT_DIR TBB_INCLUDE_DIR) (Required is at least version "2018")
-- TBB not found, enabling 'builtin_tbb' option
-- Performing Test CXX_HAS_mno_rtm
-- Performing Test CXX_HAS_mno_rtm - Success
-- Looking for VDT
-- Found Vdt: /home/neel/Desktop/Root/install/include (found suitable version "0.4", minimum required is "0.4")
-- Looking for Protobuf
-- Found Protobuf: /usr/lib/x86_64-linux-gnu/libprotobuf.so;-lpthread (found version "3.6.1")
-- Cannot select cudnn without selecting cuda or tmva-gpu. Option is ignored
-- Looking for BLAS for optional parts of TMVA
-- Looking for sgemm_
-- Looking for sgemm_ - not found
-- Looking for sgemm_
-- Looking for sgemm_ - found
-- Found BLAS: /usr/lib/x86_64-linux-gnu/libblas.so
-- Performing Test ROOT_HAVE_CXX_ATOMICS_WITHOUT_LIB
-- Performing Test ROOT_HAVE_CXX_ATOMICS_WITHOUT_LIB - Success
-- Building LLVM in 'Release' mode.
-- The ASM compiler identification is GNU
-- Found assembler: /usr/bin/cc
-- Could NOT find Z3: Found unsuitable version "0.0.0", but required is at least "4.7.1" (found Z3_LIBRARIES-NOTFOUND)
-- Looking for backtrace
-- Looking for backtrace - found
-- backtrace facility detected in default set of libraries
-- Found Backtrace: /usr/include
-- Native target architecture is X86
-- Threads disabled.
-- Doxygen disabled.
-- Go bindings disabled.
-- Could NOT find OCaml (missing: OCAMLFIND OCAML_VERSION OCAML_STDLIB_PATH)
-- OCaml bindings disabled.
-- Found Python module pygments
-- Found Python module pygments.lexers.c_cpp
-- Found Python module yaml
-- LLVM host triple: x86_64-unknown-linux-gnu
-- LLVM default target triple: x86_64-unknown-linux-gnu
-- Building with -fPIC
-- Found PythonInterp: /home/neel/anaconda3/bin/python3.7 (found version "3.7.6")
-- Constructing LLVMBuild project information
-- Linker detection: GNU ld
-- Targeting X86
-- Targeting NVPTX
-- Clang version: 9.0.1
-- Cling version (from VERSION file): ROOT_1.0~dev
-- Cling will look for C++ headers in '/usr/include/c++/9:/usr/include/x86_64-linux-gnu/c++/9:/usr/include/c++/9/backward' at runtime.
-- And then fallback to: 'x86_64-linux-gnu-g++-9'
-- Performing Test CXX_HAS_fno_rtti
-- Performing Test CXX_HAS_fno_rtti - Success
-- Performing Test C_HAS_Wno_strict_overflow
-- Performing Test C_HAS_Wno_strict_overflow - Success
-- Performing Test C_HAS_Wno_maybe_uninitialized
-- Performing Test C_HAS_Wno_maybe_uninitialized - Success
-- Performing Test C_HAS_Wno_parentheses_equality
-- Performing Test C_HAS_Wno_parentheses_equality - Success
-- Looking for m
-- Looking for m - not found
-- Use SSL API VERSION 1.1 for civetweb
-- Performing Test GCC_HAS_BIDI_CHARS_FLAG
-- Performing Test GCC_HAS_BIDI_CHARS_FLAG - Failed
-- Requirements to enable distributed RDataFrame:
-- dataframe: required:ON, actual:ON
-- Python version: required:>=3.8, actual:3.7.6
-- Performing Test found_setresuid
-- Performing Test found_setresuid - Success
-- Performing Test found_stdstringview
-- Performing Test found_stdstringview - Failed
-- Performing Test found_stdexpstringview
-- Performing Test found_stdexpstringview - Success
-- Performing Test found_stod_stringview
-- Performing Test found_stod_stringview - Failed
-- Performing Test found_opplusequal_stringview
-- Performing Test found_opplusequal_stringview - Failed
-- Performing Test found_stdapply
-- Performing Test found_stdapply - Failed
-- Performing Test found_stdinvoke
-- Performing Test found_stdinvoke - Failed
-- Performing Test found_stdindexsequence
-- Performing Test found_stdindexsequence - Success
-- Performing Test found_attribute_always_inline
-- Performing Test found_attribute_always_inline - Success
-- Performing Test has_found_attribute_noinline
-- Performing Test has_found_attribute_noinline - Success
-- Performing Test found_hardware_interference_size
-- Performing Test found_hardware_interference_size - Failed
Running /home/neel/Desktop/Root/root/build/unix/compiledata.sh
Making /home/neel/Desktop/Root/build/ginclude/compiledata.h
-- 585/841 C++ tutorials have been activated.
-- 186/230 python tutorials have been activated.
-- Check for bitness: Found 64 bit architecture.
-- Scanning subdirectories for tests...
-- Found py_pytest: /home/neel/anaconda3/lib/python3.7/site-packages/pytest
-- ROOT Configuration
System Linux-5.15.0-52-generic
Processor 8 core AMD Ryzen 9 5900HX with Radeon Graphics (x86_64)
Build type Release
Install path /home/neel/Desktop/Root/install
Compiler GNU 9.4.0
Compiler flags:
C -Wno-implicit-fallthrough -pipe -Wall -W -pthread -O3 -DNDEBUG
C++ -std=c++14 -Wno-implicit-fallthrough -Wno-noexcept-type -pipe -Wshadow -Wall -W -Woverloaded-virtual -fsigned-char -pthread -O3 -DNDEBUG
Linker flags:
Executable -rdynamic
Module
Shared -Wl,--no-undefined -Wl,--hash-style="both"
-- Enabled support for: asimage builtin_afterimage builtin_clang builtin_cling builtin_gl2ps builtin_llvm builtin_lz4 builtin_lzma builtin_nlohmannjson builtin_openui5 builtin_tbb builtin_xrootd builtin_xxhash builtin_zstd clad dataframe exceptions fftw3 fitsio gdml http imt mathmore mlp minuit2 mysql opengl pyroot roofit rpath runtime_cxxmodules shared ssl tmva tmva-cpu tmva-sofie tmva-pymva spectrum vdt x11 xml xrootd
-- Configuring done
-- Generating done
-- Build files have been written to: /home/neel/Desktop/Root/build
The complete output of building with cmake --build . --target install -- -j 1 (or simply make).
Please refer this google doc (Since Word limit is reached output cant be posted here):-
Error:-
<<< cling interactive line includer >>>: fatal error: module file '/home/neel/Desktop/Root/build/lib/Rint.pcm' is out of date and needs to be rebuilt: could not read module signature
<<< cling interactive line includer >>>: note: imported by module 'MathCore' in '/home/neel/Desktop/Root/build/lib/MathCore.pcm'
Error: Module 'MathCore.pcm' failed to load.
Error: Error loading the default rootcling header files.
make[2]: *** [math/mathmore/CMakeFiles/G__MathMore.dir/build.make:130: math/mathmore/G__MathMore.cxx] Error 1
make[1]: *** [CMakeFiles/Makefile2:36538: math/mathmore/CMakeFiles/G__MathMore.dir/all] Error 2
make: *** [Makefile:163: all] Error 2
(base) neel@neel-ASUS-TUF-Gaming-A15-FA506QM-FA506QM:~/Desktop/Root/build$
Thanks, unfortunately nothing obvious :(.
What is the result of:
ls -lart lib/Rint.pcm lib/MathCore.pcm
in that build directory?
Hello @pcanal
The following is the output:-
(base) neel@neel-ASUS-TUF-Gaming-A15-FA506QM-FA506QM:~/Desktop/Root/build$ ls -lart lib/Rint.pcm lib/MathCore.pcm
-rw-rw-r-- 1 neel neel 11538356 Nov 9 23:43 lib/MathCore.pcm
-rw-rw-r-- 1 neel neel 428436 Nov 9 23:58 lib/Rint.pcm