I made two changes and it compiled and installed completely
-
I used
make -j3
rather than just
make
I hope that this didn’t have any effect, as it would indicate a race condition somewhere in the makefile -
I clicked on the “XCode” application before the gmake command. I clicked on the xcode application because I wanted to see what version of xcode I was running. When I did this xcode popped up a window saying that it needed to download additional files. Note that I had already done the xcode-select command, so this was in addition to that.
After this two changes, most likely the latter, everything worked.
Paul
After trying to successfully rebuild root from source after updating my OS this is the solution that worked for me.
Hi,
I am just trying to compile ROOT 6.26/04 on Debian testing (bookworm) and unfortunately it crashes with an issue w.r.t. to RInt.pcm:
[84%] Generating G__Rint.cxx, ../../lib/Rint.pcm
Scanning dependencies of target G__Rint
[ 84%] Building CXX object core/rint/CMakeFiles/G__Rint.dir/G__Rint.cxx.o
[ 84%] Built target G__Rint
[ 84%] Building CXX object core/rint/CMakeFiles/Rint.dir/src/TRint.cxx.o
[ 84%] Building CXX object core/rint/CMakeFiles/Rint.dir/src/TTabCom.cxx.o
[ 84%] Linking CXX shared library ../../lib/libRint.so
[ 84%] Built target Rint
[ 84%] Generating G__MathMore.cxx, ../../lib/MathMore.pcm
<<< cling interactive line includer >>>: fatal error: module file '/products/src.ROOT/root_build/v6-26-04/lib/Rint.pcm' is out of date and needs to be rebuilt: could not read module signature
<<< cling interactive line includer >>>: note: imported by module 'MathCore' in '/products/src.ROOT/root_build/v6-26-04/lib/MathCore.pcm'
Error: Module 'MathCore.pcm' failed to load.
Error: Error loading the default rootcling header files.
gmake[2]: *** [math/mathmore/CMakeFiles/G__MathMore.dir/build.make:142: math/mathmore/G__MathMore.cxx] Error 1
gmake[1]: *** [CMakeFiles/Makefile2:26638: math/mathmore/CMakeFiles/G__MathMore.dir/all] Error 2
gmake: *** [Makefile:156: all] Error 2
Any advice for a work-around?
Thank you,
w.w.
Hi,
trying to compile again with the recent ROOT 6.26/06 on Debian testing (bookworm) it crashes with the same issue w.r.t. RInt.pcm being out-of-date. However, removing all *.pcm files and then running make -j6 successfully completes the build. Thanks for the hint above.
Thanks for continuing to investigate the issue,
w.w.
1 Like
FYI I just hit the same issue on latest root master on my Fedora 35.
I first tried rm lib/*.pcm as @Axel suggested. Then cmaking however failed with a similar error - in particular the old error plus:
gmake[2]: *** [sql/mysql/CMakeFiles/G__RMySQL.dir/build.make:88: sql/mysql/G__RMySQL.cxx] Error 1
gmake[2]: *** [io/sql/CMakeFiles/G__SQLIO.dir/build.make:91: io/sql/G__SQLIO.cxx] Error 1
gmake[1]: *** [CMakeFiles/Makefile2:41433: sql/mysql/CMakeFiles/G__RMySQL.dir/all] Error 2
gmake[1]: *** Waiting for unfinished jobs....
gmake[1]: *** [CMakeFiles/Makefile2:35775: io/sql/CMakeFiles/G__SQLIO.dir/all] Error 2
[ 75%] Built target unordered_mapDict
<<< cling interactive line includer >>>: remark: building module 'MultiProc' as '[...]/rb/lib/MultiProc.pcm' [-Rmodule-build]
Error: Building module 'MultiProc' implicitly. If 'MultiProc' requires a
dictionary please specify build dependency: 'G__Imt.cxx' depends on 'MultiProc'.
Otherwise, specify '-mByproduct MultiProc' to disable this diagnostic.
Subprocess aborted
gmake[2]: *** [net/auth/CMakeFiles/G__RootAuth.dir/build.make:89: net/auth/G__RootAuth.cxx] Error 1
gmake[1]: *** [CMakeFiles/Makefile2:36142: net/auth/CMakeFiles/G__RootAuth.dir/all] Error 2
Subprocess aborted
Then, I applyed @eguiraud 's suggestion to delete all .pcm files (i.e. find . -name "*.pcm" -type f -delete), then cmake was successful.
I never changed the number of cores in cmake - always entering -j32.
I am still facing this error when building on the current master branch. Can someone help with it?
How did you start the build (exact commad line)?
cmake -Dtesting=ON -Droottest=ON roottest -Dtmva-sofie=ON -Dbuiltin_xrootd=ON -DPython3_EXECUTABLE=python3 -DPython2_EXECUTABLE=python -DCMAKE_INSTALL_PREFIX=../install ../root
cmake --build . --target install
I got the following error
<<< cling interactive line includer >>>: fatal error: module file '/home/neel/Desktop/Root/build/lib/Rint.pcm' is out of date and needs to be rebuilt: could not read module signature
<<< cling interactive line includer >>>: note: imported by module 'MathCore' in '/home/neel/Desktop/Root/build/lib/MathCore.pcm'
Error: Module 'MathCore.pcm' failed to load.
Error: Error loading the default rootcling header files.
make[2]: *** [math/mathmore/CMakeFiles/G__MathMore.dir/build.make:130: math/mathmore/G__MathMore.cxx] Error 1
make[1]: *** [CMakeFiles/Makefile2:36652: math/mathmore/CMakeFiles/G__MathMore.dir/all] Error 2
make: *** [Makefile:163: all] Error 2
Getting a similar kind of error since recently on my Mac as well. Using a custom ROOT build that was working fine a week ago, but trying to run the root executable now results in the following error message (results in a segfault):
input_line_1:1:2: error: module 'Darwin' uses additional module map
'/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/_types.modulemap' used when the module was
built
#include <new>
^
input_line_1:1:2: note: imported by module 'std' in '/Users/ahmadh/biodynamo/build/third_party/root/lib/std.pcm'
Warning in cling::IncrementalParser::CheckABICompatibility():
Failed to extract C++ standard library version.
Warning in cling::IncrementalParser::CheckABICompatibility():
Possible C++ standard library mismatch, compiled with _LIBCPP_ABI_VERSION '1'
Extraction of runtime standard library version was: ''
input_line_2:1:2: fatal error: module file '/Users/ahmadh/biodynamo/build/third_party/root/lib/std.pcm' is out of date and needs to be rebuilt
#include "cling/Interpreter/RuntimeUniverse.h"
^
input_line_2:1:2: note: imported by module 'Cling_Runtime_Extra' in '/Users/ahmadh/biodynamo/build/third_party/root/lib/Cling_Runtime_Extra.pcm'
input_line_2:1:2: note: imported by module 'Cling_Runtime' in '/Users/ahmadh/biodynamo/build/third_party/root/lib/Cling_Runtime.pcm'
Replaced symbol atexit cannot be found in JIT!
Replaced symbol at_quick_exit cannot be found in JIT!
<<< cling interactive line includer >>>: fatal error: module file '/Users/ahmadh/biodynamo/build/third_party/root/lib/Darwin.pcm' is out of date and needs to be rebuilt
I have the feeling something with the standard C++ libs has changed on my machine, but I am not aware of any updates. Perhaps something changed in the background
Edit: I haven’t tried rebuilding with deleting the *.pcm files yet, but it is strange to me that these PCM files got invalidated suddenly.
This looks like a different error on a different platform. Can you open a different thread to keep this one focused on the original problem?
Hello @pcanal I tried the solution provided by you but i am still facing that issue.
Can you suggest some other solution?
Hello @Neel_Shah
I think you are facing this open issue (C++ modules: dependency issue on out of date Rint.pcm · Issue #10271 · root-project/root · GitHub).
Which platform are you using it ?
@vvassilev do you know what is causing this ?
Lorenzo
This is pretty much my development platform and I do not encounter this problem.
Can you please start from scratch and send us:
- The complete cmake command use to configure
- The complete output of that cmake command
- The complete output of building with
cmake --build . --target install -- -j 1(or simplymake).
Hello @pcanal @moneta here are the outputs.
The complete cmake command use to configure
cmake -Dtesting=ON -Droottest=ON roottest -Dtmva-sofie=ON -Dbuiltin_xrootd=ON -DPython3_EXECUTABLE=python3 -DPython2_EXECUTABLE=python -DCMAKE_INSTALL_PREFIX=../install ../root
The complete output of that cmake command
(base) neel@neel-ASUS-TUF-Gaming-A15-FA506QM-FA506QM:~/Desktop/Root/build$ cmake -Dtesting=ON -Droottest=ON roottest -Dtmva-sofie=ON -Dbuiltin_xrootd=ON -DPython3_EXECUTABLE=python3 -DPython2_EXECUTABLE=python -DCMAKE_INSTALL_PREFIX=../install ../root
-- Detected ROOT_VERSION 6.27.01
-- Checking internet connectivity...
-- Yes
-- Looking for Python
-- Could NOT find Python2 (missing: Python2_EXECUTABLE Interpreter NumPy) (found version "2.7")
-- Found GCC. Major version 9, minor version 4
-- ROOT Platform: linux
-- ROOT Compiler: GNU 9.4.0
-- ROOT Processor: x86_64
-- ROOT Architecture: linuxx8664gcc
-- Build Type: 'Release' (flags = '-O3 -DNDEBUG')
-- Compiler Flags: -std=c++14 -Wno-implicit-fallthrough -Wno-noexcept-type -pipe -Wshadow -Wall -W -Woverloaded-virtual -fsigned-char -pthread -O3 -DNDEBUG
-- ROOT default compression algorithm: zlib
-- PyROOT will be built for version 3.7.6
-- Looking for ZLib
-- Looking for Freetype
-- Looking for PCRE
-- Building LZMA version 5.2.4 included in ROOT itself
-- Looking for X11
-- Could NOT find GIF (missing: GIF_LIBRARY GIF_INCLUDE_DIR)
-- Could NOT find TIFF (missing: TIFF_LIBRARY TIFF_INCLUDE_DIR)
-- Building AfterImage library included in ROOT itself
-- Looking for GSL
-- Looking for OpenGL
-- Looking for GLEW
-- Looking for LibXml2
-- Looking for MySQL
-- Looking for FFTW3
-- Looking for CFITSIO
-- Downloading and building XROOTD version 5.5.1
-- Looking for libuuid
-- Looking for VDT
-- Looking for Protobuf
-- Cannot select cudnn without selecting cuda or tmva-gpu. Option is ignored
-- Looking for BLAS for optional parts of TMVA
-- Building LLVM in 'Release' mode.
-- Could NOT find Z3: Found unsuitable version "0.0.0", but required is at least "4.7.1" (found Z3_LIBRARIES-NOTFOUND)
-- Native target architecture is X86
-- Threads disabled.
-- Doxygen disabled.
-- Go bindings disabled.
-- Could NOT find OCaml (missing: OCAMLFIND OCAML_VERSION OCAML_STDLIB_PATH)
-- OCaml bindings disabled.
-- LLVM host triple: x86_64-unknown-linux-gnu
-- LLVM default target triple: x86_64-unknown-linux-gnu
-- Building with -fPIC
-- Constructing LLVMBuild project information
-- Linker detection: GNU ld
-- Targeting X86
-- Targeting NVPTX
-- Clang version: 9.0.1
-- Cling version (from VERSION file): ROOT_1.0~dev
-- Cling will look for C++ headers in '/usr/include/c++/9:/usr/include/x86_64-linux-gnu/c++/9:/usr/include/c++/9/backward' at runtime.
-- And then fallback to: 'x86_64-linux-gnu-g++-9'
-- Use SSL API VERSION 1.1 for civetweb
-- Requirements to enable distributed RDataFrame:
-- dataframe: required:ON, actual:ON
-- Python version: required:>=3.8, actual:3.7.6
-- Performing Test found_stdstringview
-- Performing Test found_stdstringview - Failed
-- Performing Test found_stdexpstringview
-- Performing Test found_stdexpstringview - Success
-- Performing Test found_stod_stringview
-- Performing Test found_stod_stringview - Failed
-- Performing Test found_stdapply
-- Performing Test found_stdapply - Failed
-- Performing Test found_stdinvoke
-- Performing Test found_stdinvoke - Failed
-- Performing Test found_stdindexsequence
-- Performing Test found_stdindexsequence - Success
-- 585/841 C++ tutorials have been activated.
-- 186/230 python tutorials have been activated.
-- Check for bitness: Found 64 bit architecture.
-- Scanning subdirectories for tests...
-- ROOT Configuration
System Linux-5.15.0-52-generic
Processor 8 core AMD Ryzen 9 5900HX with Radeon Graphics (x86_64)
Build type Release
Install path /home/neel/Desktop/Root/install
Compiler GNU 9.4.0
Compiler flags:
C -Wno-implicit-fallthrough -pipe -Wall -W -pthread -O3 -DNDEBUG
C++ -std=c++14 -Wno-implicit-fallthrough -Wno-noexcept-type -pipe -Wshadow -Wall -W -Woverloaded-virtual -fsigned-char -pthread -O3 -DNDEBUG
Linker flags:
Executable -rdynamic
Module
Shared -Wl,--no-undefined -Wl,--hash-style="both"
-- Enabled support for: asimage builtin_afterimage builtin_clang builtin_cling builtin_gl2ps builtin_llvm builtin_lz4 builtin_lzma builtin_nlohmannjson builtin_openui5 builtin_tbb builtin_xrootd builtin_xxhash builtin_zstd clad dataframe exceptions fftw3 fitsio gdml http imt mathmore mlp minuit2 mysql opengl pyroot roofit rpath runtime_cxxmodules shared ssl tmva tmva-cpu tmva-sofie tmva-pymva spectrum vdt x11 xml xrootd
-- Configuring done
-- Generating done
-- Build files have been written to: /home/neel/Desktop/Root/build
The complete output of building with cmake --build . --target install -- -j 1 (or simply make).
(base) neel@neel-ASUS-TUF-Gaming-A15-FA506QM-FA506QM:~/Desktop/Root/build$ cmake --build . --target install -- -j 1
[ 0%] Built target TBB
[ 0%] Built target AFTERIMAGE
[ 0%] Built target move_header_roofit_hs3
[ 0%] Built target copymodulemap
[ 0%] Built target builtin_nlohmann_json_incl
[ 0%] Built target xxhash
[ 1%] Built target zstd
[ 1%] Built target lz4
[ 1%] Built target XROOTD
[ 1%] Built target move_header_core_clib
[ 1%] Built target move_header_core_clingutils
[ 2%] Built target move_header_core_cont
[ 2%] Built target move_header_core_foundation
[ 2%] Built target move_header_core_gui
[ 2%] Built target move_header_core_meta
[ 2%] Built target move_header_core_multiproc
[ 2%] Built target move_header_core_rint
[ 2%] Built target move_header_core_textinput
[ 3%] Built target move_header_core_thread
[ 3%] Built target move_header_core_imt
[ 3%] Built target move_header_core_zip
[ 3%] Built target move_header_core_lzma
[ 3%] Built target move_header_core_lz4
[ 3%] Built target move_header_core_zstd
[ 3%] Built target move_header_core_newdelete
[ 4%] Built target move_header_core_base
[ 4%] Built target move_header_core_unix
[ 5%] Built target move_header_math_mathcore
[ 5%] Built target move_header_math_mathmore
[ 5%] Built target move_header_math_matrix
[ 5%] Built target move_header_math_minuit
[ 6%] Built target move_header_math_minuit2
[ 6%] Built target move_header_math_fumili
[ 7%] Built target move_header_math_physics
[ 7%] Built target move_header_math_mlp
[ 7%] Built target move_header_math_quadp
[ 7%] Built target move_header_math_foam
[ 7%] Built target move_header_math_smatrix
[ 7%] Built target move_header_math_splot
[ 8%] Built target move_header_math_genvector
[ 8%] Built target move_header_math_genetic
[ 8%] Built target move_header_math_fftw
[ 8%] Built target move_header_math_vecops
[ 9%] Built target move_header_hist_hist
[ 9%] Built target move_header_hist_histpainter
[ 9%] Built target move_header_hist_spectrum
[ 9%] Built target move_header_hist_spectrumpainter
[ 9%] Built target move_header_hist_unfold
[ 10%] Built target move_header_tree_tree
[ 10%] Built target move_header_tree_treeplayer
[ 10%] Built target move_header_tree_treeviewer
[ 10%] Built target move_header_tree_dataframe
[ 12%] Built target move_header_io_io
[ 12%] Built target move_header_io_sql
[ 12%] Built target move_header_io_xml
[ 12%] Built target move_header_io_xmlparser
[ 12%] Built target move_header_net_net
[ 12%] Built target move_header_net_auth
[ 12%] Built target move_header_net_netxng
[ 12%] Built target move_header_net_http
[ 12%] Built target move_header_net_httpsniff
[ 13%] Built target move_header_graf2d_gpad
[ 13%] Built target move_header_graf2d_graf
[ 13%] Built target move_header_graf2d_postscript
[ 13%] Built target move_header_graf2d_x11
[ 13%] Built target move_header_graf2d_x11ttf
[ 13%] Built target move_header_graf2d_asimage
[ 13%] Built target move_header_graf2d_fitsio
[ 13%] Built target move_header_graf3d_g3d
[ 13%] Built target move_header_graf3d_x3d
[ 13%] Built target move_header_graf3d_csg
[ 13%] Built target move_header_graf3d_rglew
[ 14%] Built target move_header_graf3d_eve
[ 15%] Built target move_header_graf3d_gl
[ 15%] Built target move_header_graf3d_gviz3d
[ 16%] Built target move_header_gui_gui
[ 16%] Built target move_header_gui_ged
[ 16%] Built target move_header_gui_fitpanel
[ 16%] Built target move_header_gui_guibuilder
[ 16%] Built target move_header_gui_guihtml
[ 16%] Built target move_header_gui_recorder
[ 16%] Built target move_header_gui_sessionviewer
[ 17%] Built target move_header_proof_proof
[ 17%] Built target move_header_proof_proofplayer
[ 17%] Built target move_header_proof_proofbench
[ 17%] Built target move_header_html
[ 17%] Built target move_header_montecarlo_eg
[ 17%] Built target move_header_geom_geom
[ 17%] Built target move_header_geom_geombuilder
[ 17%] Built target move_header_geom_geompainter
[ 17%] Built target move_header_geom_gdml
[ 17%] Built target move_header_bindings_tpython
[ 17%] Built target move_header_sql_mysql
[ 19%] Built target move_header_tmva_tmva
[ 19%] Built target move_header_tmva_tmvagui
[ 19%] Built target move_header_tmva_pymva
[ 20%] Built target move_header_tmva_sofie
[ 20%] Built target move_header_tmva_sofie_parsers
[ 20%] Built target move_header_roofit_batchcompute
[ 23%] Built target move_header_roofit_roofitcore
[ 24%] Built target move_header_roofit_roofit
[ 24%] Built target move_header_roofit_roofitmore
[ 24%] Built target move_header_roofit_roostats
[ 24%] Built target move_header_roofit_histfactory
[ 24%] Built target move_header_roofit_RDataFrameHelpers
[ 24%] Built target move_headers
[ 24%] Built target RootPcmObjs
[ 24%] Built target Unix
[ 24%] Built target LZMA
[ 24%] Built target obj.clang-tblgen
[ 24%] Built target LLVMDemangle
[ 25%] Built target LLVMSupport
[ 25%] Built target LLVMTableGen
[ 25%] Built target clang-tblgen
[ 25%] Built target ClangSACheckers
[ 25%] Built target ClangAttrImpl
[ 25%] Built target StmtDataCollectors
[ 25%] Built target ClangCommentHTMLTags
[ 25%] Built target ClangAttrClasses
[ 25%] Built target ClangCommentHTMLTagsProperties
[ 25%] Built target ClangAttrVisitor
[ 25%] Built target ClangAttrTextDump
[ 25%] Built target ClangCommentNodes
[ 25%] Built target ClangDeclNodes
[ 25%] Built target ClangAttrTraverse
[ 25%] Built target ClangCommentHTMLNamedCharacterReferences
[ 25%] Built target ClangStmtNodes
[ 25%] Built target ClangCommentCommandInfo
[ 25%] Built target ClangCommentCommandList
[ 25%] Built target ClangARMFP16
[ 25%] Built target ClangARMNeon
[ 25%] Built target ClangAttrHasAttributeImpl
[ 25%] Built target ClangAttrSubjectMatchRuleList
[ 25%] Built target ClangAttrList
[ 25%] Built target ClangDiagnosticIndexName
[ 25%] Built target ClangDiagnosticAnalysis
[ 25%] Built target ClangDiagnosticAST
[ 25%] Built target ClangDiagnosticComment
[ 25%] Built target ClangDiagnosticCrossTU
[ 25%] Built target ClangDiagnosticCommon
[ 25%] Built target ClangDiagnosticDriver
[ 25%] Built target ClangDiagnosticLex
[ 25%] Built target ClangDiagnosticParse
[ 25%] Built target ClangDiagnosticRefactoring
[ 25%] Built target ClangDiagnosticSema
[ 25%] Built target ClangDiagnosticFrontend
[ 25%] Built target ClangDiagnosticSerialization
[ 25%] Built target ClangDiagnosticGroups
[ 25%] Built target ClangAttrSubMatchRulesParserStringSwitches
[ 25%] Built target ClangAttrParserStringSwitches
[ 25%] Built target ClangAttrParsedAttrList
[ 25%] Built target ClangAttrSpellingListIndex
[ 26%] Built target ClangAttrParsedAttrKinds
[ 26%] Built target ClangAttrParsedAttrImpl
[ 26%] Built target ClangAttrTemplateInstantiate
[ 26%] Built target ClangAttrPCHWrite
[ 26%] Built target ClangAttrPCHRead
[ 26%] Built target clang-tablegen-targets
[ 26%] Built target ClangOpenCLBuiltinsImpl
[ 27%] Built target obj.llvm-tblgen
[ 27%] Built target llvm-tblgen
[ 27%] Built target intrinsics_gen
[ 27%] Built target clang-headers
[ 27%] Built target obj.clingUtils
[ 27%] Built target clingUtils
[ 29%] Built target clang-resource-headers
[ 29%] Built target clang-cmake-exports
[ 29%] Built target obj.clangSema
[ 29%] Built target clangSema
[ 29%] Built target ClangDriverOptions
[ 29%] Updating cling-compiledata.h
[ 29%] Updating cling-compiledata.h
[ 29%] Built target obj.clingInterpreter
[ 29%] Built target clingInterpreter
[ 29%] Built target obj.clingMetaProcessor
[ 29%] Built target clingMetaProcessor
[ 29%] Built target CLING
[ 29%] Generating ../include/RGitCommit.h
[ 29%] Built target gitcommit
[ 29%] Built target rconfigure
[ 29%] Generating ../ginclude/RGitCommit.h
[ 29%] Generating ../ginclude/RGitCommit.h
[ 29%] Built target BaseTROOT
[ 29%] Built target Foundation_Stage1
[ 29%] Built target AttributeCompatFuncTableGen
[ 29%] Built target LLVMCore
[ 29%] Built target LLVMIRReader
[ 31%] Built target LLVMCodeGen
[ 31%] Built target LLVMSelectionDAG
[ 31%] Built target LLVMAsmPrinter
[ 31%] Built target LLVMGlobalISel
[ 31%] Built target LLVMBinaryFormat
[ 31%] Built target LLVMBitReader
[ 31%] Built target LLVMBitWriter
[ 31%] Built target LLVMBitstreamReader
[ 32%] Built target LLVMTransformUtils
[ 32%] Built target LLVMInstrumentation
[ 32%] Built target LLVMAggressiveInstCombine
[ 32%] Built target InstCombineTableGen
[ 34%] Built target LLVMInstCombine
[ 35%] Built target LLVMScalarOpts
[ 35%] Built target LLVMipo
[ 35%] Built target LLVMVectorize
[ 35%] Built target LLVMObjCARCOpts
[ 35%] Built target LLVMCoroutines
[ 35%] Built target LLVMLinker
[ 36%] Built target LLVMAnalysis
[ 36%] Generating VCSRevision.h
[ 36%] Built target llvm_vcsrevision_h
[ 36%] Built target LLVMLTO
[ 36%] Built target LLVMMC
[ 36%] Built target LLVMMCParser
[ 36%] Built target LLVMMCDisassembler
[ 36%] Built target LLVMObject
[ 36%] Built target LLVMOption
[ 36%] Built target LLVMRemarks
[ 36%] Built target LLVMDebugInfoDWARF
[ 36%] Built target LLVMDebugInfoMSF
[ 37%] Built target LLVMDebugInfoCodeView
[ 37%] Built target LLVMExecutionEngine
[ 37%] Built target LLVMJITLink
[ 37%] Built target LLVMPasses
[ 37%] Built target LLVMTarget
[ 37%] Built target LLVMAsmParser
[ 37%] Built target LLVMProfileData
[ 37%] Built target LLVMOrcJIT
[ 37%] Built target LLVMRuntimeDyld
[ 38%] Built target X86CommonTableGen
[ 38%] Built target LLVMX86CodeGen
[ 38%] Built target LLVMX86AsmParser
[ 38%] Built target LLVMX86Disassembler
[ 39%] Built target LLVMX86Desc
[ 39%] Built target LLVMX86Info
[ 39%] Built target LLVMX86Utils
[ 39%] Built target NVPTXCommonTableGen
[ 39%] Built target LLVMNVPTXCodeGen
[ 39%] Built target LLVMNVPTXDesc
[ 39%] Built target LLVMNVPTXInfo
[ 39%] Built target LLVMCoverage
[ 39%] Built target obj.clangBasic
[ 39%] Built target clangBasic
[ 39%] Built target obj.clangLex
[ 39%] Built target clangLex
[ 39%] Built target obj.clangParse
[ 39%] Built target clangParse
[ 39%] Built target obj.clangAST
[ 39%] Built target clangAST
[ 39%] Built target obj.clangASTMatchers
[ 39%] Built target clangASTMatchers
[ 39%] Built target obj.clangCodeGen
[ 39%] Built target clangCodeGen
[ 40%] Built target obj.clangAnalysis
[ 40%] Built target clangAnalysis
[ 40%] Built target obj.clangEdit
[ 40%] Built target clangEdit
[ 40%] Built target obj.clangRewrite
[ 40%] Built target clangRewrite
[ 40%] Built target obj.clangDriver
[ 40%] Built target clangDriver
[ 41%] Built target obj.clangSerialization
[ 41%] Built target clangSerialization
[ 42%] Built target obj.clangFrontend
[ 42%] Built target clangFrontend
[ 42%] Built target obj.clangRewriteFrontend
[ 42%] Built target clangRewriteFrontend
[ 42%] Built target Clib
[ 42%] Built target LLVMRES
[ 42%] Built target ClingUtils
[ 43%] Built target Dictgen
[ 45%] Built target rootcling_stage1
[ 45%] Generating G__Core.cxx, ../lib/Core.pcm
[ 45%] Building CXX object core/CMakeFiles/G__Core.dir/G__Core.cxx.o
[ 45%] Built target G__Core
[ 45%] Built target Cont
[ 45%] Built target Foundation
[ 45%] Built target GuiCore
[ 46%] Built target Meta
[ 46%] Built target TextInput
[ 46%] Built target Zip
[ 46%] Built target Lzma
[ 46%] Built target Lz4
[ 46%] Built target Zstd
[ 46%] Built target Base
[ 46%] Linking CXX shared library ../lib/libCore.so
[ 46%] Built target Core
[ 46%] Generating G__Thread.cxx, ../../lib/Thread.pcm
Scanning dependencies of target G__Thread
[ 46%] Building CXX object core/thread/CMakeFiles/G__Thread.dir/G__Thread.cxx.o
[ 46%] Built target G__Thread
[ 46%] Linking CXX shared library ../../lib/libThread.so
[ 46%] Built target Thread
[ 46%] Generating G__RIO.cxx, ../../lib/RIO.pcm
Scanning dependencies of target G__RIO
[ 46%] Building CXX object io/io/CMakeFiles/G__RIO.dir/G__RIO.cxx.o
[ 46%] Built target G__RIO
[ 46%] Linking CXX shared library ../../lib/libRIO.so
[ 46%] Built target RIO
[ 46%] Generating G__complexDict.cxx, ../../lib/libcomplexDict.rootmap
Scanning dependencies of target G__complexDict
[ 46%] Building CXX object core/clingutils/CMakeFiles/G__complexDict.dir/G__complexDict.cxx.o
[ 46%] Built target G__complexDict
[ 46%] Linking CXX shared library ../../lib/libcomplexDict.so
[ 46%] Built target complexDict
[ 46%] Built target MetaCling
[ 46%] Built target clad
[ 46%] Built target Cling
[ 46%] Linking CXX executable ../bin/rootcling
[ 46%] Built target rootcling
[ 46%] Generating G__RooFitHS3.cxx, ../../lib/RooFitHS3.pcm
Scanning dependencies of target G__RooFitHS3
[ 46%] Building CXX object roofit/hs3/CMakeFiles/G__RooFitHS3.dir/G__RooFitHS3.cxx.o
[ 46%] Built target G__RooFitHS3
[ 46%] Generating G__Net.cxx, ../../lib/Net.pcm
Scanning dependencies of target G__Net
[ 46%] Building CXX object net/net/CMakeFiles/G__Net.dir/G__Net.cxx.o
[ 46%] Built target G__Net
[ 46%] Linking CXX shared library ../../lib/libNet.so
[ 46%] Built target Net
[ 46%] Generating G__MultiProc.cxx, ../../lib/MultiProc.pcm
Scanning dependencies of target G__MultiProc
[ 46%] Building CXX object core/multiproc/CMakeFiles/G__MultiProc.dir/G__MultiProc.cxx.o
[ 46%] Built target G__MultiProc
[ 46%] Linking CXX shared library ../../lib/libMultiProc.so
[ 47%] Built target MultiProc
[ 47%] Generating G__Imt.cxx, ../../lib/Imt.pcm
Scanning dependencies of target G__Imt
[ 47%] Building CXX object core/imt/CMakeFiles/G__Imt.dir/G__Imt.cxx.o
[ 47%] Built target G__Imt
[ 47%] Linking CXX shared library ../../lib/libImt.so
[ 47%] Built target Imt
[ 47%] Generating G__MathCore.cxx, ../../lib/MathCore.pcm
Scanning dependencies of target G__MathCore
[ 47%] Building CXX object math/mathcore/CMakeFiles/G__MathCore.dir/G__MathCore.cxx.o
[ 47%] Built target G__MathCore
[ 47%] Linking CXX shared library ../../lib/libMathCore.so
[ 48%] Built target MathCore
[ 48%] Generating G__Matrix.cxx, ../../lib/Matrix.pcm
Scanning dependencies of target G__Matrix
[ 48%] Building CXX object math/matrix/CMakeFiles/G__Matrix.dir/G__Matrix.cxx.o
[ 48%] Built target G__Matrix
[ 48%] Linking CXX shared library ../../lib/libMatrix.so
[ 48%] Built target Matrix
[ 48%] Built target mathtext
[ 48%] Generating G__Hist.cxx, ../../lib/Hist.pcm
Scanning dependencies of target G__Hist
[ 48%] Building CXX object hist/hist/CMakeFiles/G__Hist.dir/G__Hist.cxx.o
[ 48%] Built target G__Hist
[ 48%] Linking CXX shared library ../../lib/libHist.so
[ 49%] Built target Hist
[ 49%] Generating G__Graf.cxx, ../../lib/Graf.pcm
Scanning dependencies of target G__Graf
[ 49%] Building CXX object graf2d/graf/CMakeFiles/G__Graf.dir/G__Graf.cxx.o
[ 49%] Built target G__Graf
[ 49%] Linking CXX shared library ../../lib/libGraf.so
[ 50%] Built target Graf
[ 50%] Generating G__Minuit.cxx, ../../lib/Minuit.pcm
Scanning dependencies of target G__Minuit
[ 50%] Building CXX object math/minuit/CMakeFiles/G__Minuit.dir/G__Minuit.cxx.o
[ 50%] Built target G__Minuit
[ 50%] Linking CXX shared library ../../lib/libMinuit.so
[ 50%] Built target Minuit
[ 50%] Generating G__Minuit2.cxx, ../../lib/Minuit2.pcm
Scanning dependencies of target G__Minuit2
[ 50%] Building CXX object math/minuit2/CMakeFiles/G__Minuit2.dir/G__Minuit2.cxx.o
[ 50%] Built target G__Minuit2
[ 50%] Linking CXX shared library ../../lib/libMinuit2.so
[ 50%] Built target Minuit2
[ 50%] Generating G__Foam.cxx, ../../lib/Foam.pcm
Scanning dependencies of target G__Foam
[ 50%] Building CXX object math/foam/CMakeFiles/G__Foam.dir/G__Foam.cxx.o
[ 50%] Built target G__Foam
[ 50%] Linking CXX shared library ../../lib/libFoam.so
[ 50%] Built target Foam
[ 50%] Generating G__Smatrix32.cxx, ../../lib/libSmatrix32.rootmap
Scanning dependencies of target G__Smatrix32
[ 50%] Building CXX object math/smatrix/CMakeFiles/G__Smatrix32.dir/G__Smatrix32.cxx.o
[ 50%] Built target G__Smatrix32
[ 50%] Generating G__Smatrix.cxx, ../../lib/Smatrix.pcm
Scanning dependencies of target G__Smatrix
[ 50%] Building CXX object math/smatrix/CMakeFiles/G__Smatrix.dir/G__Smatrix.cxx.o
[ 50%] Built target G__Smatrix
[ 50%] Linking CXX shared library ../../lib/libSmatrix.so
[ 50%] Built target Smatrix
[ 50%] Generating G__Tree.cxx, ../../lib/Tree.pcm
Scanning dependencies of target G__Tree
[ 50%] Building CXX object tree/tree/CMakeFiles/G__Tree.dir/G__Tree.cxx.o
[ 50%] Built target G__Tree
[ 50%] Linking CXX shared library ../../lib/libTree.so
[ 51%] Built target Tree
[ 51%] Generating G__Gpad.cxx, ../../lib/Gpad.pcm
Scanning dependencies of target G__Gpad
[ 51%] Building CXX object graf2d/gpad/CMakeFiles/G__Gpad.dir/G__Gpad.cxx.o
[ 51%] Built target G__Gpad
[ 51%] Linking CXX shared library ../../lib/libGpad.so
[ 51%] Built target Gpad
[ 51%] Generating G__RooFitCore.cxx, ../../lib/RooFitCore.pcm
Scanning dependencies of target G__RooFitCore
[ 51%] Building CXX object roofit/roofitcore/CMakeFiles/G__RooFitCore.dir/G__RooFitCore.cxx.o
[ 51%] Built target G__RooFitCore
[ 51%] Linking CXX shared library ../../lib/libRooBatchCompute.so
[ 51%] Built target RooBatchCompute
[ 51%] Linking CXX shared library ../../lib/libRooFitCommon.so
[ 51%] Built target RooFitCommon
[ 51%] Linking CXX shared library ../../lib/libRooFitCore.so
[ 53%] Built target RooFitCore
[ 53%] Generating G__RooFit.cxx, ../../lib/RooFit.pcm
Scanning dependencies of target G__RooFit
[ 53%] Building CXX object roofit/roofit/CMakeFiles/G__RooFit.dir/G__RooFit.cxx.o
[ 53%] Built target G__RooFit
[ 53%] Linking CXX shared library ../../lib/libRooFit.so
[ 54%] Built target RooFit
[ 54%] Generating G__RooStats.cxx, ../../lib/RooStats.pcm
Scanning dependencies of target G__RooStats
[ 54%] Building CXX object roofit/roostats/CMakeFiles/G__RooStats.dir/G__RooStats.cxx.o
[ 54%] Built target G__RooStats
[ 54%] Linking CXX shared library ../../lib/libRooStats.so
[ 54%] Built target RooStats
[ 56%] Generating G__HistFactory.cxx, ../../lib/HistFactory.pcm
Scanning dependencies of target G__HistFactory
[ 56%] Building CXX object roofit/histfactory/CMakeFiles/G__HistFactory.dir/G__HistFactory.cxx.o
[ 56%] Built target G__HistFactory
[ 56%] Generating G__XMLParser.cxx, ../../lib/XMLParser.pcm
Scanning dependencies of target G__XMLParser
[ 56%] Building CXX object io/xmlparser/CMakeFiles/G__XMLParser.dir/G__XMLParser.cxx.o
[ 56%] Built target G__XMLParser
[ 56%] Linking CXX shared library ../../lib/libXMLParser.so
[ 56%] Built target XMLParser
[ 56%] Linking CXX shared library ../../lib/libHistFactory.so
[ 56%] Built target HistFactory
[ 56%] Linking CXX shared library ../../lib/libRooFitHS3.so
[ 56%] Built target RooFitHS3
[ 79%] Built target move_artifacts
[ 79%] Generating G__map2Dict.cxx, ../../lib/libmap2Dict.rootmap
Scanning dependencies of target G__map2Dict
[ 79%] Building CXX object core/clingutils/CMakeFiles/G__map2Dict.dir/G__map2Dict.cxx.o
[ 79%] Built target G__map2Dict
[ 79%] Linking CXX shared library ../../lib/libmap2Dict.so
[ 79%] Built target map2Dict
[ 79%] Generating G__forward_listDict.cxx, ../../lib/libforward_listDict.rootmap
Scanning dependencies of target G__forward_listDict
[ 79%] Building CXX object core/clingutils/CMakeFiles/G__forward_listDict.dir/G__forward_listDict.cxx.o
[ 79%] Built target G__forward_listDict
[ 79%] Linking CXX shared library ../../lib/libforward_listDict.so
[ 79%] Built target forward_listDict
[ 79%] Generating G__dequeDict.cxx, ../../lib/libdequeDict.rootmap
Scanning dependencies of target G__dequeDict
[ 79%] Building CXX object core/clingutils/CMakeFiles/G__dequeDict.dir/G__dequeDict.cxx.o
[ 79%] Built target G__dequeDict
[ 79%] Linking CXX shared library ../../lib/libdequeDict.so
[ 79%] Built target dequeDict
[ 79%] Generating G__vectorDict.cxx, ../../lib/libvectorDict.rootmap
Scanning dependencies of target G__vectorDict
[ 79%] Building CXX object core/clingutils/CMakeFiles/G__vectorDict.dir/G__vectorDict.cxx.o
[ 79%] Built target G__vectorDict
[ 79%] Linking CXX shared library ../../lib/libvectorDict.so
[ 79%] Built target vectorDict
[ 79%] Generating G__unordered_multimapDict.cxx, ../../lib/libunordered_multimapDict.rootmap
Scanning dependencies of target G__unordered_multimapDict
[ 79%] Building CXX object core/clingutils/CMakeFiles/G__unordered_multimapDict.dir/G__unordered_multimapDict.cxx.o
[ 79%] Built target G__unordered_multimapDict
[ 79%] Linking CXX shared library ../../lib/libunordered_multimapDict.so
[ 79%] Built target unordered_multimapDict
[ 79%] Generating G__valarrayDict.cxx, ../../lib/libvalarrayDict.rootmap
Scanning dependencies of target G__valarrayDict
[ 79%] Building CXX object core/clingutils/CMakeFiles/G__valarrayDict.dir/G__valarrayDict.cxx.o
[ 79%] Built target G__valarrayDict
[ 79%] Linking CXX shared library ../../lib/libvalarrayDict.so
[ 79%] Built target valarrayDict
[ 79%] Generating G__multimap2Dict.cxx, ../../lib/libmultimap2Dict.rootmap
Scanning dependencies of target G__multimap2Dict
[ 79%] Building CXX object core/clingutils/CMakeFiles/G__multimap2Dict.dir/G__multimap2Dict.cxx.o
[ 79%] Built target G__multimap2Dict
[ 79%] Linking CXX shared library ../../lib/libmultimap2Dict.so
[ 79%] Built target multimap2Dict
[ 79%] Generating G__unordered_mapDict.cxx, ../../lib/libunordered_mapDict.rootmap
Scanning dependencies of target G__unordered_mapDict
[ 79%] Building CXX object core/clingutils/CMakeFiles/G__unordered_mapDict.dir/G__unordered_mapDict.cxx.o
[ 79%] Built target G__unordered_mapDict
[ 79%] Linking CXX shared library ../../lib/libunordered_mapDict.so
[ 79%] Built target unordered_mapDict
[ 79%] Generating G__listDict.cxx, ../../lib/liblistDict.rootmap
Scanning dependencies of target G__listDict
[ 79%] Building CXX object core/clingutils/CMakeFiles/G__listDict.dir/G__listDict.cxx.o
[ 79%] Built target G__listDict
[ 79%] Linking CXX shared library ../../lib/liblistDict.so
[ 79%] Built target listDict
[ 79%] Generating G__multimapDict.cxx, ../../lib/libmultimapDict.rootmap
Scanning dependencies of target G__multimapDict
[ 79%] Building CXX object core/clingutils/CMakeFiles/G__multimapDict.dir/G__multimapDict.cxx.o
[ 79%] Built target G__multimapDict
[ 79%] Linking CXX shared library ../../lib/libmultimapDict.so
[ 79%] Built target multimapDict
[ 79%] Generating G__multisetDict.cxx, ../../lib/libmultisetDict.rootmap
Scanning dependencies of target G__multisetDict
[ 79%] Building CXX object core/clingutils/CMakeFiles/G__multisetDict.dir/G__multisetDict.cxx.o
[ 79%] Built target G__multisetDict
[ 79%] Linking CXX shared library ../../lib/libmultisetDict.so
[ 79%] Built target multisetDict
[ 79%] Generating G__setDict.cxx, ../../lib/libsetDict.rootmap
Scanning dependencies of target G__setDict
[ 79%] Building CXX object core/clingutils/CMakeFiles/G__setDict.dir/G__setDict.cxx.o
[ 79%] Built target G__setDict
[ 79%] Linking CXX shared library ../../lib/libsetDict.so
[ 79%] Built target setDict
[ 79%] Generating G__unordered_setDict.cxx, ../../lib/libunordered_setDict.rootmap
Scanning dependencies of target G__unordered_setDict
[ 79%] Building CXX object core/clingutils/CMakeFiles/G__unordered_setDict.dir/G__unordered_setDict.cxx.o
[ 79%] Built target G__unordered_setDict
[ 79%] Linking CXX shared library ../../lib/libunordered_setDict.so
[ 79%] Built target unordered_setDict
[ 79%] Generating G__mapDict.cxx, ../../lib/libmapDict.rootmap
Scanning dependencies of target G__mapDict
[ 79%] Building CXX object core/clingutils/CMakeFiles/G__mapDict.dir/G__mapDict.cxx.o
[ 79%] Built target G__mapDict
[ 79%] Linking CXX shared library ../../lib/libmapDict.so
[ 79%] Built target mapDict
[ 79%] Generating G__unordered_multisetDict.cxx, ../../lib/libunordered_multisetDict.rootmap
Scanning dependencies of target G__unordered_multisetDict
[ 79%] Building CXX object core/clingutils/CMakeFiles/G__unordered_multisetDict.dir/G__unordered_multisetDict.cxx.o
[ 79%] Built target G__unordered_multisetDict
[ 79%] Linking CXX shared library ../../lib/libunordered_multisetDict.so
[ 79%] Built target unordered_multisetDict
[ 79%] Generating G__Rint.cxx, ../../lib/Rint.pcm
Scanning dependencies of target G__Rint
[ 79%] Building CXX object core/rint/CMakeFiles/G__Rint.dir/G__Rint.cxx.o
[ 79%] Built target G__Rint
[ 79%] Linking CXX shared library ../../lib/libRint.so
[ 79%] Built target Rint
[ 79%] Generating G__MathMore.cxx, ../../lib/MathMore.pcm
<<< cling interactive line includer >>>: fatal error: module file '/home/neel/Desktop/Root/build/lib/Rint.pcm' is out of date and needs to be rebuilt: could not read module signature
<<< cling interactive line includer >>>: note: imported by module 'MathCore' in '/home/neel/Desktop/Root/build/lib/MathCore.pcm'
Error: Module 'MathCore.pcm' failed to load.
Error: Error loading the default rootcling header files.
make[2]: *** [math/mathmore/CMakeFiles/G__MathMore.dir/build.make:130: math/mathmore/G__MathMore.cxx] Error 1
make[1]: *** [CMakeFiles/Makefile2:36542: math/mathmore/CMakeFiles/G__MathMore.dir/all] Error 2
make: *** [Makefile:163: all] Error 2
Please let me know the issue and the solution for the error. Thanks a lot!
From the output is seems like you did not start from an empty directory but reconfigure/rebuild an existing directory. Please start against after deleting and creating the ~/Desktop/Root/build directory.
Hello @pcanal Here is the output of fresh build. Getting the same error
The complete cmake command use to configure
cmake -Dtesting=ON -Droottest=ON roottest -Dtmva-sofie=ON -Dbuiltin_xrootd=ON -DPython3_EXECUTABLE=python3 -DPython2_EXECUTABLE=python -DCMAKE_INSTALL_PREFIX=../install ../root
The complete output of that cmake command
(base) neel@neel-ASUS-TUsF-Gaming-A15-FA506QM-FA506QM:~$ cd Desktop/Root/
(base) neel@neel-ASUS-TUF-Gaming-A15-FA506QM-FA506QM:~/Desktop/Root$ mkdir build
(base) neel@neel-ASUS-TUF-Gaming-A15-FA506QM-FA506QM:~/Desktop/Root$ cd build/
(base) neel@neel-ASUS-TUF-Gaming-A15-FA506QM-FA506QM:~/Desktop/Root/build$ cmake -Dtesting=ON -DLLVM_INCLUDE_TESTS=OFF -Droottest=ON roottest -Dtmva-sofie=ON -Dbuiltin_xrootd=ON -DPython3_EXECUTABLE=python3 -DPython2_EXECUTABLE=python -DCMAKE_INSTALL_PREFIX=../install ../root
-- The C compiler identification is GNU 9.4.0
-- The CXX compiler identification is GNU 9.4.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found Git: /usr/local/bin/git (found version "2.26.2")
-- Detected ROOT_VERSION 6.27.01
-- Checking internet connectivity...
-- Yes
-- Looking for Python
-- Found Python3: /home/neel/anaconda3/bin/python3.7 (found version "3.7.6") found components: Interpreter Development NumPy
-- Could NOT find Python2 (missing: Python2_EXECUTABLE Interpreter NumPy) (found version "2.7")
-- Found GCC. Major version 9, minor version 4
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Performing Test GLIBCXX_USE_CXX11_ABI
-- Performing Test GLIBCXX_USE_CXX11_ABI - Success
-- ROOT Platform: linux
-- ROOT Compiler: GNU 9.4.0
-- ROOT Processor: x86_64
-- ROOT Architecture: linuxx8664gcc
-- Build Type: 'Release' (flags = '-O3 -DNDEBUG')
-- Compiler Flags: -std=c++14 -Wno-implicit-fallthrough -Wno-noexcept-type -pipe -Wshadow -Wall -W -Woverloaded-virtual -fsigned-char -pthread -O3 -DNDEBUG
-- ROOT default compression algorithm: zlib
-- PyROOT will be built for version 3.7.6
-- Looking for ZLib
-- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11")
-- Looking for nlohmann/json.hpp
-- nlohmann/json.hpp not found. Switching on builtin_nlohmannjson option
-- Looking for Freetype
-- Found Freetype: /usr/lib/x86_64-linux-gnu/libfreetype.so (found version "2.10.1")
-- Looking for PCRE
-- Found PCRE: /usr/include (found version "8.44")
-- Looking for LZMA
-- Could NOT find LibLZMA (missing: LIBLZMA_LIBRARY LIBLZMA_INCLUDE_DIR LIBLZMA_HAS_AUTO_DECODER LIBLZMA_HAS_EASY_ENCODER LIBLZMA_HAS_LZMA_PRESET)
-- LZMA not found. Switching on builtin_lzma option
-- Building LZMA version 5.2.4 included in ROOT itself
-- Looking for xxHash
-- Could NOT find xxHash (missing: xxHash_LIBRARY xxHash_INCLUDE_DIR)
-- xxHash not found. Switching on builtin_xxhash option
-- Looking for ZSTD
-- Could NOT find ZSTD (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR ZSTD_VERSION)
-- ZSTD not found. Switching on builtin_zstd option
-- Performing Test CXX_FLAG_STD_CPLUSPLUS11
-- Performing Test CXX_FLAG_STD_CPLUSPLUS11 - Success
-- Performing Test C_FLAG_STD_C99
-- Performing Test C_FLAG_STD_C99 - Success
-- Performing Test C_FLAG_WALL
-- Performing Test C_FLAG_WALL - Success
-- Performing Test CXX_FLAG_WALL
-- Performing Test CXX_FLAG_WALL - Success
-- Performing Test C_FLAG_WEXTRA
-- Performing Test C_FLAG_WEXTRA - Success
-- Performing Test CXX_FLAG_WEXTRA
-- Performing Test CXX_FLAG_WEXTRA - Success
-- Performing Test C_FLAG_WUNDEF
-- Performing Test C_FLAG_WUNDEF - Success
-- Performing Test CXX_FLAG_WUNDEF
-- Performing Test CXX_FLAG_WUNDEF - Success
-- Performing Test C_FLAG_WSHADOW
-- Performing Test C_FLAG_WSHADOW - Success
-- Performing Test CXX_FLAG_WSHADOW
-- Performing Test CXX_FLAG_WSHADOW - Success
-- Performing Test C_FLAG_WCAST_ALIGN
-- Performing Test C_FLAG_WCAST_ALIGN - Success
-- Performing Test CXX_FLAG_WCAST_ALIGN
-- Performing Test CXX_FLAG_WCAST_ALIGN - Success
-- Performing Test C_FLAG_WCAST_QUAL
-- Performing Test C_FLAG_WCAST_QUAL - Success
-- Performing Test CXX_FLAG_WCAST_QUAL
-- Performing Test CXX_FLAG_WCAST_QUAL - Success
-- Performing Test C_FLAG_WSTRICT_PROTOTYPES
-- Performing Test C_FLAG_WSTRICT_PROTOTYPES - Success
-- Looking for LZ4
-- Could NOT find LZ4 (missing: LZ4_LIBRARY LZ4_INCLUDE_DIR)
-- LZ4 not found. Switching on builtin_lz4 option
-- Looking for X11
-- Found X11: /usr/include
-- Looking for XOpenDisplay in /usr/lib/x86_64-linux-gnu/libX11.so;/usr/lib/x86_64-linux-gnu/libXext.so
-- Looking for XOpenDisplay in /usr/lib/x86_64-linux-gnu/libX11.so;/usr/lib/x86_64-linux-gnu/libXext.so - found
-- Looking for gethostbyname
-- Looking for gethostbyname - found
-- Looking for connect
-- Looking for connect - found
-- Looking for remove
-- Looking for remove - found
-- Looking for shmat
-- Looking for shmat - found
-- X11_INCLUDE_DIR: /usr/include
-- X11_LIBRARIES: /usr/lib/x86_64-linux-gnu/libX11.so;/usr/lib/x86_64-linux-gnu/libXext.so
-- X11_Xpm_INCLUDE_PATH: /usr/include
-- X11_Xpm_LIB: /usr/lib/x86_64-linux-gnu/libXpm.so
-- X11_Xft_INCLUDE_PATH: /usr/include
-- X11_Xft_LIB: /usr/lib/x86_64-linux-gnu/libXft.so
-- X11_Xext_INCLUDE_PATH: /usr/include
-- X11_Xext_LIB: /usr/lib/x86_64-linux-gnu/libXext.so
-- Could NOT find GIF (missing: GIF_LIBRARY GIF_INCLUDE_DIR)
-- Could NOT find TIFF (missing: TIFF_LIBRARY TIFF_INCLUDE_DIR)
-- Found PNG: /usr/lib/x86_64-linux-gnu/libpng.so (found version "1.6.37")
-- Found JPEG: /usr/lib/x86_64-linux-gnu/libjpeg.so (found version "80")
-- Looking for AfterImage
-- Could NOT find AfterImage (missing: AFTERIMAGE_INCLUDE_DIR AFTERIMAGE_LIBRARIES)
-- AfterImage not found. Switching on builtin_afterimage option
-- Building AfterImage library included in ROOT itself
-- Looking for GSL
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.1")
-- Found GSL: /usr/include (found suitable version "2.5", minimum required is "1.10")
-- Looking for OpenGL
-- Found OpenGL: /usr/lib/x86_64-linux-gnu/libOpenGL.so
-- Looking for GLEW
-- Found GLEW: /usr/include (found version "2.1.0")
-- Looking for gl2ps
-- Could NOT find gl2ps (missing: GL2PS_LIBRARY GL2PS_INCLUDE_DIR)
-- gl2ps not found. Switching on builtin_gl2ps option
-- Looking for LibXml2
-- Found LibXml2: /usr/lib/x86_64-linux-gnu/libxml2.so (found version "2.9.14")
-- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libcrypto.so (found version "1.1.1f")
-- Looking for MySQL
-- Found MySQL: /usr/include/mysql
-- Looking for Oracle
-- Oracle not found.
-- Oracle: You can specify includes: -DORACLE_PATH_INCLUDES=/usr/include/oracle/10.2.0.3/client
-- currently found includes:
-- Oracle: You can specify libs: -DORACLE_PATH_LIB=/usr/lib/oracle/10.2.0.3/client/lib
-- currently found libs: ORACLE_LIBRARY_OCCI-NOTFOUND;ORACLE_LIBRARY_CLNTSH-NOTFOUND;ORACLE_LIBRARY_LNNZ-NOTFOUND
-- Oracle not found. Switching off oracle option
-- Looking for PostgreSQL
-- Could NOT find PostgreSQL (missing: PostgreSQL_LIBRARY PostgreSQL_INCLUDE_DIR)
-- PostgreSQL not found. Switching off pgsql option
-- Looking for SQLite
-- Could NOT find Sqlite (missing: SQLITE_INCLUDE_DIR SQLITE_LIBRARIES)
-- SQLite not found. Switching off sqlite option
-- Looking for Pythia6
-- Pythia6 not found. Switching off pythia6 option
-- Looking for Pythia8
-- Could NOT find Pythia8 (missing: PYTHIA8_INCLUDE_DIR PYTHIA8_LIBRARY)
-- Pythia8 not found. Switching off pythia8 option
-- Looking for FFTW3
-- Found fftw3 includes at /usr/include
-- Found fftw3 library at /usr/lib/x86_64-linux-gnu/libfftw3.so
-- Looking for CFITSIO
-- Found CFITSIO: /usr/lib/x86_64-linux-gnu/libcfitsio.so (found version "3.47")
-- Downloading and building XROOTD version 5.5.1
-- Could NOT find GFAL (missing: GFAL_INCLUDE_DIR SRM_IFCE_INCLUDE_DIR GFAL_LIBRARY)
-- GFAL library not found. Set variable GFAL_DIR to point to your gfal installation
and the variable SRM_IFCE_DIR to the srm_ifce installation
-- For the time being switching OFF 'gfal' option
-- Found FTGL: /usr/include
-- Checking for module 'davix>=0.6.4'
-- No package 'davix' found
-- Looking for uuid_generate_random in uuid
-- Looking for uuid_generate_random in uuid - found
-- Found libuuid: /usr/include
-- Davix dependencies not found, switching OFF 'davix' option.
-- Looking for libuuid
-- Looking for TBB
-- Could NOT find TBB (missing: TBB_ROOT_DIR TBB_INCLUDE_DIR) (Required is at least version "2018")
-- TBB not found, enabling 'builtin_tbb' option
-- Performing Test CXX_HAS_mno_rtm
-- Performing Test CXX_HAS_mno_rtm - Success
-- Looking for VDT
-- Found Vdt: /home/neel/Desktop/Root/install/include (found suitable version "0.4", minimum required is "0.4")
-- Looking for Protobuf
-- Found Protobuf: /usr/lib/x86_64-linux-gnu/libprotobuf.so;-lpthread (found version "3.6.1")
-- Cannot select cudnn without selecting cuda or tmva-gpu. Option is ignored
-- Looking for BLAS for optional parts of TMVA
-- Looking for sgemm_
-- Looking for sgemm_ - not found
-- Looking for sgemm_
-- Looking for sgemm_ - found
-- Found BLAS: /usr/lib/x86_64-linux-gnu/libblas.so
-- Performing Test ROOT_HAVE_CXX_ATOMICS_WITHOUT_LIB
-- Performing Test ROOT_HAVE_CXX_ATOMICS_WITHOUT_LIB - Success
-- Building LLVM in 'Release' mode.
-- The ASM compiler identification is GNU
-- Found assembler: /usr/bin/cc
-- Could NOT find Z3: Found unsuitable version "0.0.0", but required is at least "4.7.1" (found Z3_LIBRARIES-NOTFOUND)
-- Looking for backtrace
-- Looking for backtrace - found
-- backtrace facility detected in default set of libraries
-- Found Backtrace: /usr/include
-- Native target architecture is X86
-- Threads disabled.
-- Doxygen disabled.
-- Go bindings disabled.
-- Could NOT find OCaml (missing: OCAMLFIND OCAML_VERSION OCAML_STDLIB_PATH)
-- OCaml bindings disabled.
-- Found Python module pygments
-- Found Python module pygments.lexers.c_cpp
-- Found Python module yaml
-- LLVM host triple: x86_64-unknown-linux-gnu
-- LLVM default target triple: x86_64-unknown-linux-gnu
-- Building with -fPIC
-- Found PythonInterp: /home/neel/anaconda3/bin/python3.7 (found version "3.7.6")
-- Constructing LLVMBuild project information
-- Linker detection: GNU ld
-- Targeting X86
-- Targeting NVPTX
-- Clang version: 9.0.1
-- Cling version (from VERSION file): ROOT_1.0~dev
-- Cling will look for C++ headers in '/usr/include/c++/9:/usr/include/x86_64-linux-gnu/c++/9:/usr/include/c++/9/backward' at runtime.
-- And then fallback to: 'x86_64-linux-gnu-g++-9'
-- Performing Test CXX_HAS_fno_rtti
-- Performing Test CXX_HAS_fno_rtti - Success
-- Performing Test C_HAS_Wno_strict_overflow
-- Performing Test C_HAS_Wno_strict_overflow - Success
-- Performing Test C_HAS_Wno_maybe_uninitialized
-- Performing Test C_HAS_Wno_maybe_uninitialized - Success
-- Performing Test C_HAS_Wno_parentheses_equality
-- Performing Test C_HAS_Wno_parentheses_equality - Success
-- Looking for m
-- Looking for m - not found
-- Use SSL API VERSION 1.1 for civetweb
-- Performing Test GCC_HAS_BIDI_CHARS_FLAG
-- Performing Test GCC_HAS_BIDI_CHARS_FLAG - Failed
-- Requirements to enable distributed RDataFrame:
-- dataframe: required:ON, actual:ON
-- Python version: required:>=3.8, actual:3.7.6
-- Performing Test found_setresuid
-- Performing Test found_setresuid - Success
-- Performing Test found_stdstringview
-- Performing Test found_stdstringview - Failed
-- Performing Test found_stdexpstringview
-- Performing Test found_stdexpstringview - Success
-- Performing Test found_stod_stringview
-- Performing Test found_stod_stringview - Failed
-- Performing Test found_opplusequal_stringview
-- Performing Test found_opplusequal_stringview - Failed
-- Performing Test found_stdapply
-- Performing Test found_stdapply - Failed
-- Performing Test found_stdinvoke
-- Performing Test found_stdinvoke - Failed
-- Performing Test found_stdindexsequence
-- Performing Test found_stdindexsequence - Success
-- Performing Test found_attribute_always_inline
-- Performing Test found_attribute_always_inline - Success
-- Performing Test has_found_attribute_noinline
-- Performing Test has_found_attribute_noinline - Success
-- Performing Test found_hardware_interference_size
-- Performing Test found_hardware_interference_size - Failed
Running /home/neel/Desktop/Root/root/build/unix/compiledata.sh
Making /home/neel/Desktop/Root/build/ginclude/compiledata.h
-- 585/841 C++ tutorials have been activated.
-- 186/230 python tutorials have been activated.
-- Check for bitness: Found 64 bit architecture.
-- Scanning subdirectories for tests...
-- Found py_pytest: /home/neel/anaconda3/lib/python3.7/site-packages/pytest
-- ROOT Configuration
System Linux-5.15.0-52-generic
Processor 8 core AMD Ryzen 9 5900HX with Radeon Graphics (x86_64)
Build type Release
Install path /home/neel/Desktop/Root/install
Compiler GNU 9.4.0
Compiler flags:
C -Wno-implicit-fallthrough -pipe -Wall -W -pthread -O3 -DNDEBUG
C++ -std=c++14 -Wno-implicit-fallthrough -Wno-noexcept-type -pipe -Wshadow -Wall -W -Woverloaded-virtual -fsigned-char -pthread -O3 -DNDEBUG
Linker flags:
Executable -rdynamic
Module
Shared -Wl,--no-undefined -Wl,--hash-style="both"
-- Enabled support for: asimage builtin_afterimage builtin_clang builtin_cling builtin_gl2ps builtin_llvm builtin_lz4 builtin_lzma builtin_nlohmannjson builtin_openui5 builtin_tbb builtin_xrootd builtin_xxhash builtin_zstd clad dataframe exceptions fftw3 fitsio gdml http imt mathmore mlp minuit2 mysql opengl pyroot roofit rpath runtime_cxxmodules shared ssl tmva tmva-cpu tmva-sofie tmva-pymva spectrum vdt x11 xml xrootd
-- Configuring done
-- Generating done
-- Build files have been written to: /home/neel/Desktop/Root/build
The complete output of building with cmake --build . --target install -- -j 1 (or simply make).
Please refer this google doc (Since Word limit is reached output cant be posted here):-
Error:-
<<< cling interactive line includer >>>: fatal error: module file '/home/neel/Desktop/Root/build/lib/Rint.pcm' is out of date and needs to be rebuilt: could not read module signature
<<< cling interactive line includer >>>: note: imported by module 'MathCore' in '/home/neel/Desktop/Root/build/lib/MathCore.pcm'
Error: Module 'MathCore.pcm' failed to load.
Error: Error loading the default rootcling header files.
make[2]: *** [math/mathmore/CMakeFiles/G__MathMore.dir/build.make:130: math/mathmore/G__MathMore.cxx] Error 1
make[1]: *** [CMakeFiles/Makefile2:36538: math/mathmore/CMakeFiles/G__MathMore.dir/all] Error 2
make: *** [Makefile:163: all] Error 2
(base) neel@neel-ASUS-TUF-Gaming-A15-FA506QM-FA506QM:~/Desktop/Root/build$