/usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.9

ROOT
1

Hi

Title says it all…

I built root from sources with no problems and --all option, but when I am trying to run RootFit I get

/localgrid_mnt/localgrid/alkaloge/root534/bin/root.exe: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.9' not found (required by /localgrid_mnt/localgrid/alkaloge/root534/lib/libCore.so)

[2012-10-31 22:27:16] /localgrid_mnt/localgrid/alkaloge/root534/bin/root.exe: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.9' not found (required by /localgrid_mnt/localgrid/alkaloge/root534/lib/libRint.so)

[2012-10-31 22:27:16] /localgrid_mnt/localgrid/alkaloge/root534/bin/root.exe: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.9' not found (required by /localgrid_mnt/localgrid/alkaloge/root534/lib/libCint.so)

Any help is appreciated.

Thanks

Alexis

2

It seems to me that you built your ROOT on a machine/system which is incompatible with the one that you now try to run that ROOT on.

3

Hi

Do not think so, since ROOT was build correctly and on top, the error I am getting is on the exact same machine that I did this…

thanks for your time anyway!

4

Try (inspect absolute paths of all libraries reported by “ldd”):
root-config --bindir
ldd root-config --bindir/root.exe
root-config --libdir
ldd root-config --libdir/libTree.so
root-config --etcdir

5

thanks!

I get

ldd `root-config --bindir`/root.exe linux-vdso.so.1 => (0x00007fff649fd000) libCore.so => /user/alkaloge/root534/lib/libCore.so (0x00002b8cca6a7000) libRint.so => /user/alkaloge/root534/lib/libRint.so (0x00002b8ccae82000) libstdc++.so.6 => /sandbox/cmss/slc5_amd64_gcc434/external/gcc/4.3.4-cms/lib64/libstdc++.so.6 (0x00002b8ccaeb7000) libgcc_s.so.1 => /sandbox/cmss/slc5_amd64_gcc434/external/gcc/4.3.4-cms/lib64/libgcc_s.so.1 (0x00002b8ccafbe000) libpthread.so.0 => /lib64/libpthread.so.0 (0x0000003472200000) libc.so.6 => /lib64/libc.so.6 (0x0000003471600000) libz.so.1 => /sandbox/cmss/slc5_amd64_gcc434/cms/cmssw-patch/CMSSW_4_2_8_patch7/external/slc5_amd64_gcc434/lib/libz.so.1 (0x00002b8ccb007000) libCint.so => /user/alkaloge/root534/lib/libCint.so (0x00002b8ccb01f000) libdl.so.2 => /lib64/libdl.so.2 (0x0000003471e00000) libm.so.6 => /lib64/libm.so.6 (0x0000003471a00000) /lib64/ld-linux-x86-64.so.2 (0x0000003471200000) alkaloge@m2:~/root534 ] root-config --libdir /user/alkaloge/root534/lib alkaloge@m2:~/root534 ] ldd `root-config --libdir`/libTree.so linux-vdso.so.1 => (0x00007fffdcbfd000) libNet.so => /user/alkaloge/root534/lib/libNet.so (0x00002b7c13f24000) libRIO.so => /user/alkaloge/root534/lib/libRIO.so (0x00002b7c14088000) libThread.so => /user/alkaloge/root534/lib/libThread.so (0x00002b7c1429f000) libCore.so => /user/alkaloge/root534/lib/libCore.so (0x00002b7c142f4000) libCint.so => /user/alkaloge/root534/lib/libCint.so (0x00002b7c14acf000) libstdc++.so.6 => /sandbox/cmss/slc5_amd64_gcc434/external/gcc/4.3.4-cms/lib64/libstdc++.so.6 (0x00002b7c15267000) libgcc_s.so.1 => /sandbox/cmss/slc5_amd64_gcc434/external/gcc/4.3.4-cms/lib64/libgcc_s.so.1 (0x00002b7c1536e000) libc.so.6 => /lib64/libc.so.6 (0x00002b7c153b7000) libMathCore.so => /user/alkaloge/root534/lib/libMathCore.so (0x00002b7c1570f000) libm.so.6 => /lib64/libm.so.6 (0x00002b7c15956000) libpthread.so.0 => /lib64/libpthread.so.0 (0x00002b7c15bd9000) libz.so.1 => /sandbox/cmss/slc5_amd64_gcc434/cms/cmssw-patch/CMSSW_4_2_8_patch7/external/slc5_amd64_gcc434/lib/libz.so.1 (0x00002b7c15df4000) libdl.so.2 => /lib64/libdl.so.2 (0x00002b7c15e0c000) /lib64/ld-linux-x86-64.so.2 (0x0000003471200000) alkaloge@m2:~/root534 ] root-config --etcdir /user/alkaloge/root534/etc

and indeed I see that is gives

libstdc++.so.6 => /sandbox/cmss/slc5_amd64_gcc434/external/gcc/4.3.4-cms/lib64/libstdc++.so.6 (0x00002b8ccaeb7000)

what that tell us ?

thanks !

6

Which compiler did you use when building ROOT?
Was it “slc5_amd64_gcc434”?
If not, you need to clean your LD_LIBRARY_PATH (and PATH).

7

first, thanks for your prompt replies :wink:

So, yes that was it

uname -a Linux m2.iihe.ac.be 2.6.18-274.18.1.el5 #1 SMP Fri Feb 10 14:14:58 CET 2012 x86_64 x86_64 x86_64 GNU/Linux alkaloge@m2:~/CMSSW_4_2_8_patch7/src/New/TopTreeAnalysis/macros ] echo $SCRAM_ARCH slc5_amd64_gcc434

and

export LD_LIBRARY_PATH=/user/alkaloge/Python-2.6.5/lib:$LD_LIBRARY_PATH=:$ROOTSYS/lib:$LD_LIBRARY_PATH=$LD_LIBRARY_PATH:~/lib:

what am I missing ?

8

Try something like: export PATH="`${ROOTSYS}/bin/root-config --bindir`:${PATH}" export LD_LIBRARY_PATH="`${ROOTSYS}/bin/root-config --libdir`:${LD_LIBRARY_PATH}" or even better, try simply: source ${ROOTSYS}/bin/thisroot.sh

9

No…always the same annoying message :frowning:

10

Does this happen immediately when you try to start “root” and/or “root.exe”?

11

it happens while trying to initialize histFactory ie

Creating directory structure... Copying skeleton configuration files... /localgrid_mnt/localgrid/alkaloge/root534/bin/root.exe: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.9' not found (required by /localgrid_mnt/localgrid/alkaloge/root534/lib/libCore.so) /localgrid_mnt/localgrid/alkaloge/root534/bin/root.exe: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.9' not found (required by /localgrid_mnt/localgrid/alkaloge/root534/lib/libRint.so) /localgrid_mnt/localgrid/alkaloge/root534/bin/root.exe: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.9' not found (required by /localgrid_mnt/localgrid/alkaloge/root534/lib/libCint.so)

apart from this, ROOT works fine…

12

I assume that if you try:
ldd /localgrid_mnt/localgrid/alkaloge/root534/lib/libCore.so
ldd /localgrid_mnt/localgrid/alkaloge/root534/lib/libRint.so
ldd /localgrid_mnt/localgrid/alkaloge/root534/lib/libCint.so
you will get:
libstdc++.so.6 => /sandbox/cmss/slc5_amd64_gcc434/external/gcc/4.3.4-cms/lib64/libstdc++.so.6
and then I don’t understand why you get an error related to “/usr/lib64/libstdc++.so.6”.

Can it be that your RooFit built was not o.k.?
Try:
ldd /localgrid_mnt/localgrid/alkaloge/root534/lib/libRooFit.so
ldd /localgrid_mnt/localgrid/alkaloge/root534/lib/libRooStats.so
ldd /localgrid_mnt/localgrid/alkaloge/root534/lib/libRootAuth.so

Can it be that you have multiple “Roo*.so” libraries in your LD_LIBRARY_PATH and then ROOT finds the improper ones (i.e. not from “/localgrid_mnt/localgrid/alkaloge/root534/lib/”)?
Try:
locate libRooFit.so libRooStats.so libRootAuth.so

13

[quote=“Wile E. Coyote”]I assume that if you try:
ldd /localgrid_mnt/localgrid/alkaloge/root534/lib/libCore.so
ldd /localgrid_mnt/localgrid/alkaloge/root534/lib/libRint.so
ldd /localgrid_mnt/localgrid/alkaloge/root534/lib/libCint.so
you will get:
libstdc++.so.6 => /sandbox/cmss/slc5_amd64_gcc434/external/gcc/4.3.4-cms/lib64/libstdc++.so.6
and then I don’t understand why you get an error related to “/usr/lib64/libstdc++.so.6”.
[/quote]

Indeed… this is what I get

[quote=Can it be that your RooFit built is not o.k.?
Try:
ldd /localgrid_mnt/localgrid/alkaloge/root534/lib/libRooFit.so
ldd /localgrid_mnt/localgrid/alkaloge/root534/lib/libRooStats.so
ldd /localgrid_mnt/localgrid/alkaloge/root534/lib/libRootAuth.so

Can it be that you have multiple “Roo*.so” libraries in your LD_LIBRARY_PATH and then ROOT finds the improper ones (i.e. not from “/localgrid_mnt/localgrid/alkaloge/root534/lib/”)?
Try:
locate libRooFit.so libRooStats.so libRootAuth.so[/quote]

I get

libstdc++.so.6 => /sandbox/cmss/slc5_amd64_gcc434/external/gcc/4.3.4-cms/lib64/libstdc++.so.6 (0x00002b1c47692000)

for all of them… Maybe is something wrong linked with CMSSW ?

thanks

-a

14

Try to configure and build your ROOT from scratch using:

15

thanks! the last one solved my problems!

Best

alexis