Using ROOT libraries in CONDOR batch system

lgolino · July 8, 2022, 6:56pm

Hi all.

So we have our analysis software built in C++ using many ROOT libraries and we run it locally, or on lxplus to perform our analysis.

We would like to submit these jobs to condor instead. I have a script set up to do all this but everytime I try I get the following root errors attached below.

It appears I may need to build a static root library to run root on condor or something? I couldn’t exactly figure out the issue and every guide was about 20 years old…

Any help appreciated.

Cheers

Warning in <TClassTable::Add>: class __gnu_cxx::__normal_iterator<char*,string> already in TClassTable
Warning in <TClassTable::Add>: class __gnu_cxx::__normal_iterator<const char*,string> already in TClassTable
Warning in <TClassTable::Add>: class __gnu_cxx::__normal_iterator<TString*,vector<TString> > already in TClassTable
Warning in <TClassTable::Add>: class __gnu_cxx::__normal_iterator<const TString*,vector<TString> > already in TClassTable
Warning in <TClassTable::Add>: class __gnu_cxx::__normal_iterator<string*,vector<string> > already in TClassTable
Warning in <TClassTable::Add>: class __gnu_cxx::__normal_iterator<const string*,vector<string> > already in TClassTable
Warning in <TClassTable::Add>: class __gnu_cxx::__normal_iterator<int*,vector<int> > already in TClassTable
Warning in <TClassTable::Add>: class __gnu_cxx::__normal_iterator<const int*,vector<int> > already in TClassTable
Warning in <TClassTable::Add>: class reverse_iterator<__gnu_cxx::__normal_iterator<TString*,vector<TString> > > already in TClassTable
Warning in <TClassTable::Add>: class reverse_iterator<__gnu_cxx::__normal_iterator<string*,vector<string> > > already in TClassTable
Warning in <TClassTable::Add>: class reverse_iterator<__gnu_cxx::__normal_iterator<int*,vector<int> > > already in TClassTable
Warning in <TClassTable::Add>: class timespec already in TClassTable
Warning in <TClassTable::Add>: class TVirtualIsAProxy already in TClassTable
Warning in <TClassTable::Add>: class TIsAProxy already in TClassTable
Warning in <TClassTable::Add>: class TStorage already in TClassTable
Warning in <TClassTable::Add>: class TObject already in TClassTable
Warning in <TClassTable::Add>: class TIterator already in TClassTable
Warning in <TClassTable::Add>: class TSubString already in TClassTable
Warning in <TClassTable::Add>: class TString already in TClassTable
Warning in <TClassTable::Add>: class TVirtualMutex already in TClassTable
Warning in <TClassTable::Add>: class TLockGuard already in TClassTable
Warning in <TClassTable::Add>: class ROOT::TVirtualRWMutex already in TClassTable
Warning in <TClassTable::Add>: class ROOT::TReadLockGuard already in TClassTable
Warning in <TClassTable::Add>: class ROOT::TWriteLockGuard already in TClassTable
Warning in <TClassTable::Add>: class TCollection already in TClassTable
Warning in <TClassTable::Add>: class TIter already in TClassTable
Warning in <TClassTable::Add>: class TSeqCollection already in TClassTable
Warning in <TClassTable::Add>: class TList already in TClassTable
Warning in <TClassTable::Add>: class TListIter already in TClassTable
Warning in <TClassTable::Add>: class SetWindowAttributes_t already in TClassTable
Warning in <TClassTable::Add>: class WindowAttributes_t already in TClassTable
Warning in <TClassTable::Add>: class Event_t already in TClassTable
Warning in <TClassTable::Add>: class GCValues_t already in TClassTable
Warning in <TClassTable::Add>: class ColorStruct_t already in TClassTable
Warning in <TClassTable::Add>: class PictureAttributes_t already in TClassTable
Warning in <TClassTable::Add>: class Segment_t already in TClassTable
Warning in <TClassTable::Add>: class Point_t already in TClassTable
Warning in <TClassTable::Add>: class Rectangle_t already in TClassTable
Warning in <TClassTable::Add>: class TNamed already in TClassTable
Warning in <TClassTable::Add>: class TDictionary already in TClassTable
Warning in <TClassTable::Add>: class TDataType already in TClassTable
Warning in <TClassTable::Add>: class TInterpreter already in TClassTable
Warning in <TClassTable::Add>: class TQObject already in TClassTable
Warning in <TClassTable::Add>: class TQObjSender already in TClassTable
Warning in <TClassTable::Add>: class TApplicationImp already in TClassTable
Warning in <TClassTable::Add>: class TApplication already in TClassTable
Warning in <TClassTable::Add>: class TAtt3D already in TClassTable
Warning in <TClassTable::Add>: class TAttAxis already in TClassTable
Warning in <TClassTable::Add>: class TAttBBox2D already in TClassTable
Warning in <TClassTable::Add>: class TAttBBox already in TClassTable
Warning in <TClassTable::Add>: class TAttFill already in TClassTable
Warning in <TClassTable::Add>: class TAttLine already in TClassTable
Warning in <TClassTable::Add>: class TAttMarker already in TClassTable
Warning in <TClassTable::Add>: class TAttPad already in TClassTable
Warning in <TClassTable::Add>: class TAttText already in TClassTable
Warning in <TClassTable::Add>: class TBase64 already in TClassTable
Warning in <TClassTable::Add>: class TStopwatch already in TClassTable
Warning in <TClassTable::Add>: class TBenchmark already in TClassTable
Warning in <TClassTable::Add>: class TBuffer3D already in TClassTable
Warning in <TClassTable::Add>: class TObjArray already in TClassTable
Warning in <TClassTable::Add>: class TObjArrayIter already in TClassTable
Warning in <TClassTable::Add>: class TClass already in TClassTable
Warning in <TClassTable::Add>: class TBuffer already in TClassTable
Warning in <TClassTable::Add>: class TColor already in TClassTable
Warning in <TClassTable::Add>: class TColorGradient already in TClassTable
Warning in <TClassTable::Add>: class TLinearGradient already in TClassTable
Warning in <TClassTable::Add>: class TRadialGradient already in TClassTable
Warning in <TClassTable::Add>: class TDatime already in TClassTable
Warning in <TClassTable::Add>: class TUUID already in TClassTable
Warning in <TClassTable::Add>: class TDirectory already in TClassTable
Warning in <TClassTable::Add>: class TEnvRec already in TClassTable
Warning in <TClassTable::Add>: class TEnv already in TClassTable
Warning in <TClassTable::Add>: class TExec already in TClassTable
Warning in <TClassTable::Add>: class TFileCollection already in TClassTable
Warning in <TClassTable::Add>: class TUrl already in TClassTable
Warning in <TClassTable::Add>: class TMD5 already in TClassTable
Warning in <TClassTable::Add>: class TFileInfo already in TClassTable
Warning in <TClassTable::Add>: class TFileInfoMeta already in TClassTable
Warning in <TClassTable::Add>: class TFolder already in TClassTable
Warning in <TClassTable::Add>: class TInetAddress already in TClassTable
Warning in <TClassTable::Add>: class TMacro already in TClassTable
Warning in <TClassTable::Add>: class TMemberInspector already in TClassTable
Warning in <TClassTable::Add>: class TMessageHandler already in TClassTable
Warning in <TClassTable::Add>: class TNotifyLinkBase already in TClassTable
Warning in <TClassTable::Add>: class TObjString already in TClassTable
Warning in <TClassTable::Add>: class TROOT already in TClassTable
Warning in <TClassTable::Add>: class TParameter<bool> already in TClassTable
Warning in <TClassTable::Add>: class TParameter<Long64_t> already in TClassTable
Warning in <TClassTable::Add>: class TParameter<long> already in TClassTable
Warning in <TClassTable::Add>: class TParameter<int> already in TClassTable
Warning in <TClassTable::Add>: class TParameter<double> already in TClassTable
Warning in <TClassTable::Add>: class TParameter<float> already in TClassTable
Warning in <TClassTable::Add>: class TMethodCall already in TClassTable
Warning in <TClassTable::Add>: class TPluginHandler already in TClassTable
Warning in <TClassTable::Add>: class TPluginManager already in TClassTable
Warning in <TClassTable::Add>: class TPoint already in TClassTable
Warning in <TClassTable::Add>: class TArray already in TClassTable
Warning in <TClassTable::Add>: class TArrayI already in TClassTable
Warning in <TClassTable::Add>: class TPRegexp already in TClassTable
Warning in <TClassTable::Add>: class TPMERegexp already in TClassTable
Warning in <TClassTable::Add>: class TStringToken already in TClassTable
Warning in <TClassTable::Add>: class TProcessID already in TClassTable
Warning in <TClassTable::Add>: class TProcessUUID already in TClassTable
Warning in <TClassTable::Add>: class TQClass already in TClassTable
Warning in <TClassTable::Add>: class TQCommand already in TClassTable
Warning in <TClassTable::Add>: class TQUndoManager already in TClassTable
Warning in <TClassTable::Add>: class TQConnection already in TClassTable
Warning in <TClassTable::Add>: class TSysEvtHandler already in TClassTable
Warning in <TClassTable::Add>: class TFileHandler already in TClassTable
Warning in <TClassTable::Add>: class TSignalHandler already in TClassTable
Warning in <TClassTable::Add>: class TStdExceptionHandler already in TClassTable
Warning in <TClassTable::Add>: class TTime already in TClassTable
Warning in <TClassTable::Add>: class TTimer already in TClassTable
Warning in <TClassTable::Add>: class FileStat_t already in TClassTable
Warning in <TClassTable::Add>: class UserGroup_t already in TClassTable
Warning in <TClassTable::Add>: class SysInfo_t already in TClassTable
Warning in <TClassTable::Add>: class CpuInfo_t already in TClassTable
Warning in <TClassTable::Add>: class MemInfo_t already in TClassTable
Warning in <TClassTable::Add>: class ProcInfo_t already in TClassTable
Warning in <TClassTable::Add>: class RedirectHandle_t already in TClassTable
Warning in <TClassTable::Add>: class TProcessEventTimer already in TClassTable
Warning in <TClassTable::Add>: class TSystem already in TClassTable
Warning in <TClassTable::Add>: class TRedirectOutputGuard already in TClassTable
Warning in <TClassTable::Add>: class TRefCnt already in TClassTable
Warning in <TClassTable::Add>: class TRef already in TClassTable
Warning in <TClassTable::Add>: class TRegexp already in TClassTable
Warning in <TClassTable::Add>: class TRemoteObject already in TClassTable
Warning in <TClassTable::Add>: class TRootIOCtor already in TClassTable
Warning in <TClassTable::Add>: class TStringLong already in TClassTable
Warning in <TClassTable::Add>: class TStyle already in TClassTable
Warning in <TClassTable::Add>: class TSystemFile already in TClassTable
Warning in <TClassTable::Add>: class TSystemDirectory already in TClassTable
Warning in <TClassTable::Add>: class TTask already in TClassTable
Warning in <TClassTable::Add>: class TTimeStamp already in TClassTable
Warning in <TClassTable::Add>: class TUri already in TClassTable
Warning in <TClassTable::Add>: class TVirtualAuth already in TClassTable
Warning in <TClassTable::Add>: class TVirtualFFT already in TClassTable
Warning in <TClassTable::Add>: class TVirtualGLPainter already in TClassTable
Warning in <TClassTable::Add>: class TVirtualGLManip already in TClassTable
Warning in <TClassTable::Add>: class TGLManager already in TClassTable
Warning in <TClassTable::Add>: class TGLPaintDevice already in TClassTable
Warning in <TClassTable::Add>: class THashTable already in TClassTable
Warning in <TClassTable::Add>: class THashTableIter already in TClassTable
Warning in <TClassTable::Add>: class TMap already in TClassTable
Warning in <TClassTable::Add>: class TPair already in TClassTable
Warning in <TClassTable::Add>: class TMapIter already in TClassTable
Warning in <TClassTable::Add>: class TVirtualMonitoringWriter already in TClassTable
Warning in <TClassTable::Add>: class TVirtualMonitoringReader already in TClassTable
Warning in <TClassTable::Add>: class TVirtualPadEditor already in TClassTable
Warning in <TClassTable::Add>: class TVirtualPad already in TClassTable
Warning in <TClassTable::Add>: class TVirtualPadPainter already in TClassTable
Warning in <TClassTable::Add>: class TVirtualPerfStats already in TClassTable
Warning in <TClassTable::Add>: class TVirtualPS already in TClassTable
Warning in <TClassTable::Add>: class TVirtualTableInterface already in TClassTable
Warning in <TClassTable::Add>: class TVirtualViewer3D already in TClassTable
Warning in <TClassTable::Add>: class TVirtualX already in TClassTable
Warning in <TClassTable::Add>: class TArrayC already in TClassTable
Warning in <TClassTable::Add>: class TArrayD already in TClassTable
Warning in <TClassTable::Add>: class TArrayF already in TClassTable
Warning in <TClassTable::Add>: class TArrayL64 already in TClassTable
Warning in <TClassTable::Add>: class TArrayL already in TClassTable
Warning in <TClassTable::Add>: class TArrayS already in TClassTable
Warning in <TClassTable::Add>: class TBits already in TClassTable
Warning in <TClassTable::Add>: class TBits::TReference already in TClassTable
Warning in <TClassTable::Add>: class TBtree already in TClassTable
Warning in <TClassTable::Add>: class TBtreeIter already in TClassTable
Warning in <TClassTable::Add>: class TClassTable already in TClassTable
Warning in <TClassTable::Add>: class TClonesArray already in TClassTable
Warning in <TClassTable::Add>: class TExMap already in TClassTable
Warning in <TClassTable::Add>: class TExMapIter already in TClassTable
Warning in <TClassTable::Add>: class THashList already in TClassTable
Warning in <TClassTable::Add>: class TObjectTable already in TClassTable
Warning in <TClassTable::Add>: class TOrdCollection already in TClassTable
Warning in <TClassTable::Add>: class TOrdCollectionIter already in TClassTable
Warning in <TClassTable::Add>: class TRefArray already in TClassTable
Warning in <TClassTable::Add>: class TRefArrayIter already in TClassTable
Warning in <TClassTable::Add>: class TRefTable already in TClassTable
Warning in <TClassTable::Add>: class TSortedList already in TClassTable
Warning in <TClassTable::Add>: class TClassRef already in TClassTable
Warning in <TClassTable::Add>: class TVirtualCollectionProxy already in TClassTable
Warning in <TClassTable::Add>: class TUnixSystem already in TClassTable
Warning in <TClassTable::Add>: class TBrowserImp already in TClassTable
Warning in <TClassTable::Add>: class TBrowser already in TClassTable
Warning in <TClassTable::Add>: class TCanvasImp already in TClassTable
Warning in <TClassTable::Add>: class TClassMenuItem already in TClassTable
Warning in <TClassTable::Add>: class TContextMenuImp already in TClassTable
Warning in <TClassTable::Add>: class TContextMenu already in TClassTable
Warning in <TClassTable::Add>: class TControlBarImp already in TClassTable
Warning in <TClassTable::Add>: class TGuiFactory already in TClassTable
Warning in <TClassTable::Add>: class TInspectorImp already in TClassTable
Warning in <TClassTable::Add>: class TObjectSpy already in TClassTable
Warning in <TClassTable::Add>: class TObjectRefSpy already in TClassTable
Warning in <TClassTable::Add>: class TFunction already in TClassTable
Warning in <TClassTable::Add>: class TMethod already in TClassTable
Warning in <TClassTable::Add>: class TToggle already in TClassTable
Warning in <TClassTable::Add>: class TToggleGroup already in TClassTable
Warning in <TClassTable::Add>: class TBaseClass already in TClassTable
Warning in <TClassTable::Add>: class TClassGenerator already in TClassTable
Warning in <TClassTable::Add>: class TClassStreamer already in TClassTable
Warning in <TClassTable::Add>: class TDataMember already in TClassTable
Warning in <TClassTable::Add>: class TOptionListItem already in TClassTable
Warning in <TClassTable::Add>: class TDictAttributeMap already in TClassTable
Warning in <TClassTable::Add>: class TGlobal already in TClassTable
Warning in <TClassTable::Add>: class TEnum already in TClassTable
Warning in <TClassTable::Add>: class TEnumConstant already in TClassTable
Warning in <TClassTable::Add>: class TFileMergeInfo already in TClassTable
Warning in <TClassTable::Add>: class TFunctionTemplate already in TClassTable
Warning in <TClassTable::Add>: class TListOfDataMembers already in TClassTable
Warning in <TClassTable::Add>: class TListOfEnums already in TClassTable
Warning in <TClassTable::Add>: class TListOfEnumsWithLock already in TClassTable
Warning in <TClassTable::Add>: class TListOfEnumsWithLockIter already in TClassTable
Warning in <TClassTable::Add>: class TListOfFunctions already in TClassTable
Warning in <TClassTable::Add>: class TListOfFunctionsIter already in TClassTable
Warning in <TClassTable::Add>: class TListOfFunctionTemplates already in TClassTable
Warning in <TClassTable::Add>: class TMemberStreamer already in TClassTable
Warning in <TClassTable::Add>: class TMethodArg already in TClassTable
Warning in <TClassTable::Add>: class TProtoClass already in TClassTable
Warning in <TClassTable::Add>: class TProtoClass::TProtoRealData already in TClassTable
Warning in <TClassTable::Add>: class TRealData already in TClassTable
Warning in <TClassTable::Add>: class ROOT::TSchemaRule already in TClassTable
Warning in <TClassTable::Add>: class ROOT::TSchemaRule::TSources already in TClassTable
Warning in <TClassTable::Add>: class ROOT::Detail::TSchemaRuleSet already in TClassTable
Warning in <TClassTable::Add>: class ROOT::Detail::TStatusBitsChecker already in TClassTable
Warning in <TClassTable::Add>: class TStreamerElement already in TClassTable
Warning in <TClassTable::Add>: class TStreamerBase already in TClassTable
Warning in <TClassTable::Add>: class TStreamerBasicPointer already in TClassTable
Warning in <TClassTable::Add>: class TStreamerLoop already in TClassTable
Warning in <TClassTable::Add>: class TStreamerBasicType already in TClassTable
Warning in <TClassTable::Add>: class TStreamerObject already in TClassTable
Warning in <TClassTable::Add>: class TStreamerObjectAny already in TClassTable
Warning in <TClassTable::Add>: class TStreamerObjectPointer already in TClassTable
Warning in <TClassTable::Add>: class TStreamerObjectAnyPointer already in TClassTable
Warning in <TClassTable::Add>: class TStreamerString already in TClassTable
Warning in <TClassTable::Add>: class TStreamerSTL already in TClassTable
Warning in <TClassTable::Add>: class TStreamerSTLstring already in TClassTable
Warning in <TClassTable::Add>: class TStreamerArtificial already in TClassTable
Warning in <TClassTable::Add>: class TVirtualStreamerInfo already in TClassTable
Warning in <TClassTable::Add>: class TVirtualArray already in TClassTable
Warning in <TClassTable::Add>: class TVirtualObject already in TClassTable
Warning in <TClassTable::Add>: class TConditionImp already in TClassTable
Warning in <TClassTable::Add>: class TPosixCondition already in TClassTable
Warning in <TClassTable::Add>: class TMutexImp already in TClassTable
Warning in <TClassTable::Add>: class TPosixMutex already in TClassTable
Warning in <TClassTable::Add>: class TThreadImp already in TClassTable
Warning in <TClassTable::Add>: class TPosixThread already in TClassTable
Warning in <TClassTable::Add>: class TThreadFactory already in TClassTable
Warning in <TClassTable::Add>: class TPosixThreadFactory already in TClassTable
Warning in <TClassTable::Add>: class TAtomicCount already in TClassTable
Warning in <TClassTable::Add>: class TCondition already in TClassTable
Warning in <TClassTable::Add>: class TMutex already in TClassTable
Warning in <TClassTable::Add>: class TRWLock already in TClassTable
Warning in <TClassTable::Add>: class TSemaphore already in TClassTable
Warning in <TClassTable::Add>: class TThread already in TClassTable
Warning in <TClassTable::Add>: class ROOT::TSpinMutex already in TClassTable
Warning in <TClassTable::Add>: class ROOT::Internal::RRawFile already in TClassTable
Warning in <TClassTable::Add>: class TFileMerger already in TClassTable
Warning in <TClassTable::Add>: class TDirectoryFile already in TClassTable
Warning in <TClassTable::Add>: class TFile already in TClassTable
Warning in <TClassTable::Add>: class TMemFile already in TClassTable
Warning in <TClassTable::Add>: class ROOT::Experimental::TBufferMerger already in TClassTable
Warning in <TClassTable::Add>: class ROOT::Experimental::TBufferMergerFile already in TClassTable
Warning in <TClassTable::Add>: class TArchiveFile already in TClassTable
Warning in <TClassTable::Add>: class TArchiveMember already in TClassTable
Warning in <TClassTable::Add>: class TBufferIO already in TClassTable
Warning in <TClassTable::Add>: class TBufferFile already in TClassTable
Warning in <TClassTable::Add>: class TBufferText already in TClassTable
Warning in <TClassTable::Add>: class TBufferJSON already in TClassTable
Warning in <TClassTable::Add>: class TGenCollectionProxy already in TClassTable
Warning in <TClassTable::Add>: class TGenCollectionProxy::Value already in TClassTable
Warning in <TClassTable::Add>: class TGenCollectionProxy::Method already in TClassTable
Warning in <TClassTable::Add>: class TCollectionProxyFactory already in TClassTable
Warning in <TClassTable::Add>: class TCollectionStreamer already in TClassTable
Warning in <TClassTable::Add>: class TCollectionClassStreamer already in TClassTable
Warning in <TClassTable::Add>: class TCollectionMemberStreamer already in TClassTable
Warning in <TClassTable::Add>: class TEmulatedCollectionProxy already in TClassTable
Warning in <TClassTable::Add>: class TEmulatedMapProxy already in TClassTable
Warning in <TClassTable::Add>: class TFileCacheRead already in TClassTable
Warning in <TClassTable::Add>: class TFree already in TClassTable
Warning in <TClassTable::Add>: class TFileCacheWrite already in TClassTable
Warning in <TClassTable::Add>: class TFPBlock already in TClassTable
Warning in <TClassTable::Add>: class TFilePrefetch already in TClassTable
Warning in <TClassTable::Add>: class TKey already in TClassTable
Warning in <TClassTable::Add>: class TKeyMapFile already in TClassTable
Warning in <TClassTable::Add>: class TLockFile already in TClassTable
Warning in <TClassTable::Add>: class TMapFile already in TClassTable
Warning in <TClassTable::Add>: class TMapRec already in TClassTable
Warning in <TClassTable::Add>: class TStreamerInfo already in TClassTable
Warning in <TClassTable::Add>: class TStreamerInfoActions::TConfiguration already in TClassTable
Warning in <TClassTable::Add>: class TStreamerInfoActions::TConfiguredAction already in TClassTable
Warning in <TClassTable::Add>: class TStreamerInfoActions::TActionSequence already in TClassTable
Warning in <TClassTable::Add>: class TZIPFile already in TClassTable
Warning in <TClassTable::Add>: class TZIPMember already in TClassTable
ERROR in cling::CIFactory::createCI():
  resource directory /cvmfs/sft.cern.ch/lcg/app/releases/ROOT/6.22.02/x86_64-centos7-gcc48-opt/etc//cling/lib/clang/9.0.1 not found!
error: unable to read PCH file /cvmfs/sft.cern.ch/lcg/app/releases/ROOT/6.22.02/x86_64-centos7-gcc48-opt/etc//allDict.cxx.pch: 'No such file or directory'
fatal error: PCH file '/cvmfs/sft.cern.ch/lcg/app/releases/ROOT/6.22.02/x86_64-centos7-gcc48-opt/etc//allDict.cxx.pch' not found: module file not found

 *** Break *** segmentation violation



===========================================================
There was a crash.
This is the entire stack trace of all threads:
===========================================================
#0  0x00002ae2b021b60c in waitpid () from /lib64/libc.so.6
#1  0x00002ae2b0198f62 in do_system () from /lib64/libc.so.6
#2  0x00002ae2ad8e5b24 in TUnixSystem::StackTrace() () from /cvmfs/sft.cern.ch/lcg/app/releases/ROOT/6.22.02/x86_64-centos7-gcc48-opt/lib/libCore.so.6.22
#3  0x00002ae2ad8e77ba in TUnixSystem::DispatchSignals(ESignals) () from /cvmfs/sft.cern.ch/lcg/app/releases/ROOT/6.22.02/x86_64-centos7-gcc48-opt/lib/libCore.so.6.22
#4  <signal handler called>
#5  0x00002ae2b93e330e in clang::Parser::ParseTopLevelDecl(clang::OpaquePtr<clang::DeclGroupRef>&, bool) () from /usr/lib64/root/libCling.so
#6  0x00002ae2b8d94f6e in cling::IncrementalParser::ParseInternal(llvm::StringRef) () from /usr/lib64/root/libCling.so
#7  0x00002ae2b8d95d3c in cling::IncrementalParser::Compile(llvm::StringRef, cling::CompilationOptions const&) () from /usr/lib64/root/libCling.so
#8  0x00002ae2b8d0d1d6 in cling::Interpreter::DeclareInternal(std::string const&, cling::CompilationOptions const&, cling::Transaction**) const () from /usr/lib64/root/libCling.so
#9  0x00002ae2b8d0d42f in cling::Interpreter::declare(std::string const&, cling::Transaction**) () from /usr/lib64/root/libCling.so
#10 0x00002ae2b8c650cf in TCling::TCling(char const*, char const*, char const* const*) () from /usr/lib64/root/libCling.so
#11 0x00002ae2b8c673a0 in CreateInterpreter () from /usr/lib64/root/libCling.so
#12 0x00002ae2ad7b1649 in TROOT::InitInterpreter() () from /cvmfs/sft.cern.ch/lcg/app/releases/ROOT/6.22.02/x86_64-centos7-gcc48-opt/lib/libCore.so.6.22
#13 0x00002ae2ad7b1a66 in ROOT::Internal::GetROOT2() () from /cvmfs/sft.cern.ch/lcg/app/releases/ROOT/6.22.02/x86_64-centos7-gcc48-opt/lib/libCore.so.6.22
#14 0x00002ae2ad8e2d43 in TUnixSystem::SetDisplay() () from /cvmfs/sft.cern.ch/lcg/app/releases/ROOT/6.22.02/x86_64-centos7-gcc48-opt/lib/libCore.so.6.22
#15 0x00002ae2af060913 in TGClient::TGClient(char const*) () from /cvmfs/sft.cern.ch/lcg/app/releases/ROOT/6.22.02/x86_64-centos7-gcc48-opt/lib/libGui.so.6.22
#16 0x00002ae2af03b948 in _GLOBAL__sub_I_TGClient.cxx () from /cvmfs/sft.cern.ch/lcg/app/releases/ROOT/6.22.02/x86_64-centos7-gcc48-opt/lib/libGui.so.6.22
#17 0x00002ae2a11859c3 in _dl_init_internal () from /lib64/ld-linux-x86-64.so.2
#18 0x00002ae2a117717a in _dl_start_user () from /lib64/ld-linux-x86-64.so.2
#19 0x0000000000000007 in ?? ()
#20 0x00007fff3eb256e0 in ?? ()
#21 0x00007fff3eb25739 in ?? ()
#22 0x00007fff3eb25775 in ?? ()
#23 0x00007fff3eb257b1 in ?? ()
#24 0x00007fff3eb257ed in ?? ()
#25 0x00007fff3eb25829 in ?? ()
#26 0x00007fff3eb25865 in ?? ()
#27 0x0000000000000000 in ?? ()
===========================================================


The lines below might hint at the cause of the crash.
You may get help by asking at the ROOT forum http://root.cern.ch/forum
Only if you are really convinced it is a bug in ROOT then please submit a
report at http://root.cern.ch/bugs Please post the ENTIRE stack trace
from above as an attachment in addition to anything else
that might help us fixing this issue.
===========================================================
#5  0x00002ae2b93e330e in clang::Parser::ParseTopLevelDecl(clang::OpaquePtr<clang::DeclGroupRef>&, bool) () from /usr/lib64/root/libCling.so
#6  0x00002ae2b8d94f6e in cling::IncrementalParser::ParseInternal(llvm::StringRef) () from /usr/lib64/root/libCling.so
#7  0x00002ae2b8d95d3c in cling::IncrementalParser::Compile(llvm::StringRef, cling::CompilationOptions const&) () from /usr/lib64/root/libCling.so
#8  0x00002ae2b8d0d1d6 in cling::Interpreter::DeclareInternal(std::string const&, cling::CompilationOptions const&, cling::Transaction**) const () from /usr/lib64/root/libCling.so
#9  0x00002ae2b8d0d42f in cling::Interpreter::declare(std::string const&, cling::Transaction**) () from /usr/lib64/root/libCling.so
#10 0x00002ae2b8c650cf in TCling::TCling(char const*, char const*, char const* const*) () from /usr/lib64/root/libCling.so
#11 0x00002ae2b8c673a0 in CreateInterpreter () from /usr/lib64/root/libCling.so
#12 0x00002ae2ad7b1649 in TROOT::InitInterpreter() () from /cvmfs/sft.cern.ch/lcg/app/releases/ROOT/6.22.02/x86_64-centos7-gcc48-opt/lib/libCore.so.6.22
#13 0x00002ae2ad7b1a66 in ROOT::Internal::GetROOT2() () from /cvmfs/sft.cern.ch/lcg/app/releases/ROOT/6.22.02/x86_64-centos7-gcc48-opt/lib/libCore.so.6.22
#14 0x00002ae2ad8e2d43 in TUnixSystem::SetDisplay() () from /cvmfs/sft.cern.ch/lcg/app/releases/ROOT/6.22.02/x86_64-centos7-gcc48-opt/lib/libCore.so.6.22
#15 0x00002ae2af060913 in TGClient::TGClient(char const*) () from /cvmfs/sft.cern.ch/lcg/app/releases/ROOT/6.22.02/x86_64-centos7-gcc48-opt/lib/libGui.so.6.22
#16 0x00002ae2af03b948 in _GLOBAL__sub_I_TGClient.cxx () from /cvmfs/sft.cern.ch/lcg/app/releases/ROOT/6.22.02/x86_64-centos7-gcc48-opt/lib/libGui.so.6.22
#17 0x00002ae2a11859c3 in _dl_init_internal () from /lib64/ld-linux-x86-64.so.2
#18 0x00002ae2a117717a in _dl_start_user () from /lib64/ld-linux-x86-64.so.2
#19 0x0000000000000007 in ?? ()
#20 0x00007fff3eb256e0 in ?? ()
#21 0x00007fff3eb25739 in ?? ()
#22 0x00007fff3eb25775 in ?? ()
#23 0x00007fff3eb257b1 in ?? ()
#24 0x00007fff3eb257ed in ?? ()
#25 0x00007fff3eb25829 in ?? ()
#26 0x00007fff3eb25865 in ?? ()
#27 0x0000000000000000 in ?? ()
===========================================================

Please read tips for efficient and successful posting and posting code

ROOT Version: 6.22
Platform: Centos7
Compiler: Not Provided

bellenot · July 8, 2022, 7:22pm

I see several topics on the forum related to ROOT and Condor, but if none of them can help you, I’m not sure who can give some hints. Maybe @Axel once he’s back next week

lgolino · July 8, 2022, 7:39pm

Hi, thanks for the swift response.

It seems the ones that are relevent (those I saw from google) are these:

and

But they are both from 2006 and I couldn’t manage to follow the steps found here.

All the other links do not really relate to my issue, or don’t have a complete solution.

Cheers

bellenot · July 8, 2022, 7:42pm

OK, so I’ll have to figure out if it’s possible to build a static ROOT library, but I don’t think so. I’ll try to investigate next week

FoxWise · July 9, 2022, 4:01pm

Would it be possible to provide more information?

How does a minimal reproduction script looks like?
What is the environment when you run locally and when you submit as a a job?

Before assuming something serious wrong with root, I would strongly investigate environment confusion, maybe two roots installed simultaneously, etc…

cheers,
Bohdan

lgolino · July 12, 2022, 9:16am

Guys Im sorry I am dumb. This was an error in my script. Apologies if I wasted anyone’s time. I even rebuilt my local root package attempting to build a static root library… Turns out my config.sh file which detects lxplus or local, didn’t detect the hostname as lxplus in the condor node. I changed it to find the hostname and do the same thing in cern.ch as lxplus

system · July 26, 2022, 9:17am

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