Hi ROOT experts,
I have a very simple problem: the script below is supposed to dump a ROOT file in an ascii file.
#!/bin/tcsh -f
bbrroot -b <<!
TFile *f=new TFile("/nfs/farm/babar/AWG21/Breco/GLWADS/test/ntp/signal/Dstar0K/TMVA/var6/Chained1005-BchToD0KAll-R18b-dk-Rec3023_Fisher.root");
TTree *mytree=f->Get("T");
mytree->SetScanField(0);
int numb=mytree->GetEntries();
cout << numb << endl;
mytree->Scan("*","","precision=12",numb,0); >/output/Fisher.dat
!
gzip /output/Fisher.dat
exit
My problem is the following: the script gets completed properly (ie I get the .dat file as output with the correct content) when I execute it from a Unix prompt, but when I submit it in batch, the job fails, and it seems due to ROOT.
[yakut01] ~/TMVA/reader > bsub -q short -C 0 -o log/myFisher-3023-ccbar.log myFisher/myFisher-3023-ccbar.csh
The log file contains:
[quote] [yakut01] ~/TMVA/reader > more log/myFisher-3023-ccbar.log
-
* -
W E L C O M E to R O O T * -
* - Version 5.10/00c 31 March 2006 *
-
* - You are welcome to visit our Web site *
-
[root.cern.ch](http://root.cern.ch) * -
*
Compiled on 22 June 2006 for linux with thread support.
CINT/ROOT C/C++ Interpreter version 5.16.8, February 9, 2006
Type ? for help. Commands must be C++ statements.
Enclose multiple statements between { }.
Vincent Tisserand Root Logon
LOAD libRooFit
RooFit v2.07 – Developed by Wouter Verkerke and David Kirkby
Copyright © 2000-2005 NIKHEF, University of California & Stanford University
All rights reserved, please read roofit.sourceforge.net/license.txt
For approved plots use: gROOT->SetStyle("BABAR");
To add a BABAR label use: BABARLabel();
To add a better-scaling BABAR label use: BABARSmartLabel();
type “BABARSmartLabel(-2);” for options
BaBar Style has been loaded
222997
*** Break *** segmentation violation
Generating stack trace…
0x003b697d in from /afs/slac.stanford.edu/g/babar/package/root/5.10-00c/Linux24SL3_i386_gcc323/lib/libCint.so
0x003b7790 in G__process_cmd + 0x2da from /afs/slac.stanford.edu/g/babar/package/root/5.10-00c/Linux24SL3_i386_gcc323/lib/libCint.so
0x007ab300 in TCint::ProcessLine(char const*, TInterpreter::EErrorCode*) + 0x138 from /afs/slac.stanford.edu/g/babar/package/root/5.10-00c/Linux24SL3_i386_gcc323/lib/libCore.so
0x006ee556 in TApplication::ProcessLine(char const*, bool, int*) + 0x61e from /afs/slac.stanford.edu/g/babar/package/root/5.10-00c/Linux24SL3_i386_gcc323/lib/libCore.so
0x001f9d8f in TRint::HandleTermInput() + 0x1dd from /afs/slac.stanford.edu/g/babar/package/root/5.10-00c/Linux24SL3_i386_gcc323/lib/libRint.so
0x001f8a7e in TTermInputHandler::Notify() + 0x24 from /afs/slac.stanford.edu/g/babar/package/root/5.10-00c/Linux24SL3_i386_gcc323/lib/libRint.so
0x001fa644 in TTermInputHandler::ReadNotify() + 0x12 from /afs/slac.stanford.edu/g/babar/package/root/5.10-00c/Linux24SL3_i386_gcc323/lib/libRint.so
0x0083146e in TUnixSystem::CheckDescriptors() + 0x144 from /afs/slac.stanford.edu/g/babar/package/root/5.10-00c/Linux24SL3_i386_gcc323/lib/libCore.so
0x0083035c in TUnixSystem::DispatchOneEvent(bool) + 0x152 from /afs/slac.stanford.edu/g/babar/package/root/5.10-00c/Linux24SL3_i386_gcc323/lib/libCore.so
0x007669f8 in TSystem::InnerLoop() + 0x18 from /afs/slac.stanford.edu/g/babar/package/root/5.10-00c/Linux24SL3_i386_gcc323/lib/libCore.so
0x0076699d in TSystem::Run() + 0x6f from /afs/slac.stanford.edu/g/babar/package/root/5.10-00c/Linux24SL3_i386_gcc323/lib/libCore.so
0x006ef036 in TApplication::Run(bool) + 0x32 from /afs/slac.stanford.edu/g/babar/package/root/5.10-00c/Linux24SL3_i386_gcc323/lib/libCore.so
0x001f9820 in TRint::Run(bool) + 0x3ea from /afs/slac.stanford.edu/g/babar/package/root/5.10-00c/Linux24SL3_i386_gcc323/lib/libRint.so
0x080488dd in main + 0x71 from /afs/slac.stanford.edu/g/babar/package/root/5.10-00c/Linux24SL3_i386_gcc323/bin/root.exe
0x0266d79a in __libc_start_main + 0xda from /lib/tls/libc.so.6
0x080487e1 in _Unwind_Resume + 0x31 from /afs/slac.stanford.edu/g/babar/package/root/5.10-00c/Linux24SL3_i386_gcc323/bin/root.exe
This is the end of ROOT – Goodbye
gzip: /nfs/farm/babar/AWG21/Breco/GLWADS/test/ntp/signal/Dstar0K/TMVA/var6/3023_Fisher-ccbar.dat: No such file or directory
Sender: LSF System lsf@cob0303
Subject: Job 933108: <myFisher/myFisher-3023-ccbar.csh> Done
Job <myFisher/myFisher-3023-ccbar.csh> was submitted from host by user .
Job was executed on host(s) , in queue , as user .
</u/br/latour> was used as the home directory.
</u/br/latour/TMVA/reader> was used as the working directory.
Started at Mon Aug 21 08:52:09 2006
Results reported at Mon Aug 21 08:52:16 2006
Your job looked like:
LSBATCH: User input
myFisher/myFisher-3023-ccbar.csh
Successfully completed.
Resource usage summary:
CPU time : 1.38 sec.
Max Memory : 1 MB
Max Swap : 4 MB
Max Processes : 1
Max Threads : 1
The output (if any) is above this job summary.[/quote]
Has anyone any idea what the problem can be, and what I can do to be able to get this job completed in batch?
Thanks in advance.
Cheers,
Emmanuel