Hi all.
I am runing a computer with ubunut 20.04
I created a new environment and installed conda with the command:
When I activate the environment and use the command “root” I get the following error:
Fatal in <TROOT::InitInterpreter>: cannot load library /home/rgrau/root/lib/libRIO.so: undefined symbol: _ZN6TNamed11ShowMembersER16TMemberInspector
If I deactivate the environment, root 5 works fine, but I need root 6.
Does anyone know how to solve the problem?
Thank you.
ROOT Version: 6.26/02Platform: Ubuntu 20.04Compiler: Not Provided
Hello @Roger_Grau ,
and welcome to the ROOT forum. You should only have one ROOT installation in the environment at a time. When using ROOT 6 you should not have ROOT 5 activated.
Cheers,
I’m surprised this gives you ROOT 6.26/02, I’d expect it to give you 6.26/06. Can you share the output of running:
conda activate myrootenv
conda info
conda list
env
root -l -b -q -e '1+1' -x
You are right I got 6.26/06. Here are the outputs:
rgrau@ThinkPad-L15:~$ conda activate myrootenv
(myrootenv) rgrau@ThinkPad-L15:~$ conda info
active environment : myrootenv
active env location : /home/rgrau/miniconda3/envs/myrootenv
shell level : 1
user config file : /home/rgrau/.condarc
populated config files : /home/rgrau/.condarc
/home/rgrau/miniconda3/envs/myrootenv/.condarc
conda version : 4.14.0
conda-build version : not installed
python version : 3.9.5.final.0
virtual packages : __linux=5.14.0=0
__glibc=2.31=0
__unix=0=0
__archspec=1=x86_64
base environment : /home/rgrau/miniconda3 (writable)
conda av data dir : /home/rgrau/miniconda3/etc/conda
conda av metadata url : None
channel URLs : https://conda.anaconda.org/conda-forge/linux-64
https://conda.anaconda.org/conda-forge/noarch
https://repo.anaconda.com/pkgs/main/linux-64
https://repo.anaconda.com/pkgs/main/noarch
https://repo.anaconda.com/pkgs/r/linux-64
https://repo.anaconda.com/pkgs/r/noarch
package cache : /home/rgrau/miniconda3/pkgs
/home/rgrau/.conda/pkgs
envs directories : /home/rgrau/miniconda3/envs
/home/rgrau/.conda/envs
platform : linux-64
user-agent : conda/4.14.0 requests/2.28.1 CPython/3.9.5 Linux/5.14.0-1051-oem ubuntu/20.04.5 glibc/2.31
UID:GID : 1001:1001
netrc file : None
offline mode : False
(myrootenv) rgrau@ThinkPad-L15:~$ conda list
# packages in environment at /home/rgrau/miniconda3/envs/myrootenv:
#
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 2_gnu conda-forge
_sysroot_linux-64_curr_repodata_hack 3 h5bd9786_13 conda-forge
afterimage 1.21 ha9998ff_1003 conda-forge
argon2-cffi 21.3.0 pyhd8ed1ab_0 conda-forge
argon2-cffi-bindings 21.2.0 py38h0a891b7_2 conda-forge
asttokens 2.0.8 pyhd8ed1ab_0 conda-forge
atk-1.0 2.36.0 h3371d22_4 conda-forge
attrs 22.1.0 pyh71513ae_1 conda-forge
backcall 0.2.0 pyh9f0ad1d_0 conda-forge
backports 1.0 py_2 conda-forge
backports.functools_lru_cache 1.6.4 pyhd8ed1ab_0 conda-forge
beautifulsoup4 4.11.1 pyha770c72_0 conda-forge
binutils 2.36.1 hdd6e379_2 conda-forge
binutils_impl_linux-64 2.36.1 h193b22a_2 conda-forge
binutils_linux-64 2.36 hf3e587d_10 conda-forge
bleach 5.0.1 pyhd8ed1ab_0 conda-forge
bzip2 1.0.8 h7f98852_4 conda-forge
c-ares 1.18.1 h7f98852_0 conda-forge
c-compiler 1.5.0 h166bdaf_0 conda-forge
ca-certificates 2022.6.15 ha878542_0 conda-forge
cairo 1.16.0 ha61ee94_1013 conda-forge
cffi 1.15.1 py38h4a40e3a_0 conda-forge
cfitsio 4.1.0 hd9d235c_0 conda-forge
colorama 0.4.5 pyhd8ed1ab_0 conda-forge
compilers 1.5.0 ha770c72_0 conda-forge
cxx-compiler 1.5.0 h924138e_0 conda-forge
davix 0.8.2 h2122014_0 conda-forge
debugpy 1.6.3 py38hfa26641_0 conda-forge
decorator 5.1.1 pyhd8ed1ab_0 conda-forge
defusedxml 0.7.1 pyhd8ed1ab_0 conda-forge
entrypoints 0.4 pyhd8ed1ab_0 conda-forge
executing 1.0.0 pyhd8ed1ab_0 conda-forge
expat 2.4.8 h27087fc_0 conda-forge
fftw 3.3.10 nompi_hf0379b8_105 conda-forge
flit-core 3.7.1 pyhd8ed1ab_0 conda-forge
font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge
font-ttf-inconsolata 3.000 h77eed37_0 conda-forge
font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge
font-ttf-ubuntu 0.83 hab24e00_0 conda-forge
fontconfig 2.14.0 h8e229c2_0 conda-forge
fonts-conda-ecosystem 1 0 conda-forge
fonts-conda-forge 1 0 conda-forge
fortran-compiler 1.5.0 h2a4ca65_0 conda-forge
freetype 2.12.1 hca18f0e_0 conda-forge
fribidi 1.0.10 h36c2ea0_0 conda-forge
ftgl 2.4.0 hbcb1f35_0 conda-forge
gcc 10.3.0 he2824d0_10 conda-forge
gcc_impl_linux-64 10.3.0 hf2f2afa_16 conda-forge
gcc_linux-64 10.3.0 hc39de41_10 conda-forge
gdk-pixbuf 2.42.8 hff1cb4f_0 conda-forge
gettext 0.19.8.1 h73d1719_1008 conda-forge
gfortran 10.3.0 h18518b4_10 conda-forge
gfortran_impl_linux-64 10.3.0 h73f4979_16 conda-forge
gfortran_linux-64 10.3.0 hb09a455_10 conda-forge
giflib 5.2.1 h36c2ea0_2 conda-forge
gl2ps 1.4.2 h0708190_0 conda-forge
glew 2.1.0 h9c3ff4c_2 conda-forge
graphite2 1.3.13 h58526e2_1001 conda-forge
graphviz 5.0.1 h5abf519_0 conda-forge
gsl 2.7 he838d99_0 conda-forge
gsoap 2.8.119 h90a1d37_0 conda-forge
gtk2 2.24.33 h90689f9_2 conda-forge
gts 0.7.6 h64030ff_2 conda-forge
gxx 10.3.0 he2824d0_10 conda-forge
gxx_impl_linux-64 10.3.0 hf2f2afa_16 conda-forge
gxx_linux-64 10.3.0 h2593f52_10 conda-forge
harfbuzz 5.1.0 hf9f4e7c_0 conda-forge
icu 70.1 h27087fc_0 conda-forge
importlib-metadata 4.11.4 py38h578d9bd_0 conda-forge
importlib_resources 5.9.0 pyhd8ed1ab_0 conda-forge
ipykernel 6.15.2 pyh210e3f2_0 conda-forge
ipyparallel 8.4.1 pyhd8ed1ab_0 conda-forge
ipython 8.5.0 pyh41d4057_1 conda-forge
ipython_genutils 0.2.0 py_1 conda-forge
jedi 0.18.1 pyhd8ed1ab_2 conda-forge
jinja2 3.1.2 pyhd8ed1ab_1 conda-forge
jpeg 9e h166bdaf_2 conda-forge
jsonschema 4.15.0 pyhd8ed1ab_0 conda-forge
jupyter_client 7.3.5 pyhd8ed1ab_0 conda-forge
jupyter_core 4.11.1 py38h578d9bd_0 conda-forge
jupyterlab_pygments 0.2.2 pyhd8ed1ab_0 conda-forge
kernel-headers_linux-64 3.10.0 h4a8ded7_13 conda-forge
keyutils 1.6.1 h166bdaf_0 conda-forge
krb5 1.19.3 h3790be6_0 conda-forge
ld_impl_linux-64 2.36.1 hea4e1c9_2 conda-forge
lerc 4.0.0 h27087fc_0 conda-forge
libblas 3.9.0 16_linux64_openblas conda-forge
libcblas 3.9.0 16_linux64_openblas conda-forge
libcurl 7.83.1 h7bff187_0 conda-forge
libcxx 14.0.6 hf52228f_0 conda-forge
libcxxabi 14.0.6 ha770c72_0 conda-forge
libdeflate 1.13 h166bdaf_0 conda-forge
libedit 3.1.20191231 he28a2e2_2 conda-forge
libev 4.33 h516909a_1 conda-forge
libffi 3.4.2 h7f98852_5 conda-forge
libgcc-devel_linux-64 10.3.0 he6cfe16_16 conda-forge
libgcc-ng 12.1.0 h8d9b700_16 conda-forge
libgd 2.3.3 h18fbbfe_3 conda-forge
libgfortran-ng 12.1.0 h69a702a_16 conda-forge
libgfortran5 12.1.0 hdcd56e2_16 conda-forge
libglib 2.72.1 h2d90d5f_0 conda-forge
libglu 9.0.0 he1b5a44_1001 conda-forge
libgomp 12.1.0 h8d9b700_16 conda-forge
libiconv 1.16 h516909a_0 conda-forge
liblapack 3.9.0 16_linux64_openblas conda-forge
libllvm11 11.1.0 hf817b99_3 conda-forge
libllvm9 9.0.1 default_hc23dcda_7 conda-forge
libnghttp2 1.47.0 hdcd2b5c_1 conda-forge
libopenblas 0.3.21 pthreads_h78a6416_3 conda-forge
libpng 1.6.37 h753d276_4 conda-forge
librsvg 2.54.4 h7abd40a_0 conda-forge
libsanitizer 10.3.0 h26c7422_16 conda-forge
libsodium 1.0.18 h36c2ea0_1 conda-forge
libsqlite 3.39.3 h753d276_0 conda-forge
libssh2 1.10.0 haa6b8db_3 conda-forge
libstdcxx-devel_linux-64 10.3.0 he6cfe16_16 conda-forge
libstdcxx-ng 12.1.0 ha89aaad_16 conda-forge
libtiff 4.4.0 h0e0dad5_3 conda-forge
libtool 2.4.6 h9c3ff4c_1008 conda-forge
libuuid 2.32.1 h7f98852_1000 conda-forge
libwebp 1.2.4 h522a892_0 conda-forge
libwebp-base 1.2.4 h166bdaf_0 conda-forge
libxcb 1.13 h7f98852_1004 conda-forge
libxml2 2.9.14 h22db469_4 conda-forge
libxslt 1.1.35 h8affb1d_0 conda-forge
libzlib 1.2.12 h166bdaf_2 conda-forge
llvmlite 0.38.1 py38h38d86a4_0 conda-forge
lxml 4.9.1 py38h0a891b7_0 conda-forge
lz4-c 1.9.3 h9c3ff4c_1 conda-forge
markupsafe 2.1.1 py38h0a891b7_1 conda-forge
matplotlib-inline 0.1.6 pyhd8ed1ab_0 conda-forge
metakernel 0.29.2 pyhd8ed1ab_0 conda-forge
mistune 2.0.4 pyhd8ed1ab_0 conda-forge
nbclient 0.6.7 pyhd8ed1ab_0 conda-forge
nbconvert 7.0.0 pyhd8ed1ab_0 conda-forge
nbconvert-core 7.0.0 pyhd8ed1ab_0 conda-forge
nbconvert-pandoc 7.0.0 pyhd8ed1ab_0 conda-forge
nbformat 5.4.0 pyhd8ed1ab_0 conda-forge
ncurses 6.3 h27087fc_1 conda-forge
nest-asyncio 1.5.5 pyhd8ed1ab_0 conda-forge
nlohmann_json 3.10.5 h27087fc_1 conda-forge
notebook 6.4.12 pyha770c72_0 conda-forge
numba 0.55.2 py38hdc3674a_0 conda-forge
numpy 1.22.4 py38h99721a1_0 conda-forge
openssl 1.1.1q h166bdaf_0 conda-forge
packaging 21.3 pyhd8ed1ab_0 conda-forge
pandoc 2.19.2 ha770c72_0 conda-forge
pandocfilters 1.5.0 pyhd8ed1ab_0 conda-forge
pango 1.50.9 hc4f8a73_0 conda-forge
parso 0.8.3 pyhd8ed1ab_0 conda-forge
pcre 8.45 h9c3ff4c_0 conda-forge
pexpect 4.8.0 pyh9f0ad1d_2 conda-forge
pickleshare 0.7.5 py_1003 conda-forge
pip 22.2.2 pyhd8ed1ab_0 conda-forge
pixman 0.40.0 h36c2ea0_0 conda-forge
pkgutil-resolve-name 1.3.10 pyhd8ed1ab_0 conda-forge
portalocker 2.5.1 py38h578d9bd_0 conda-forge
prometheus_client 0.14.1 pyhd8ed1ab_0 conda-forge
prompt-toolkit 3.0.31 pyha770c72_0 conda-forge
psutil 5.9.2 py38h0a891b7_0 conda-forge
pthread-stubs 0.4 h36c2ea0_1001 conda-forge
ptyprocess 0.7.0 pyhd3deb0d_0 conda-forge
pure_eval 0.2.2 pyhd8ed1ab_0 conda-forge
pycparser 2.21 pyhd8ed1ab_0 conda-forge
pygments 2.13.0 pyhd8ed1ab_0 conda-forge
pyparsing 3.0.9 pyhd8ed1ab_0 conda-forge
pyrsistent 0.18.1 py38h0a891b7_1 conda-forge
pythia8 8.305 py38h709712a_0 conda-forge
python 3.8.10 hb7a2778_2_cpython conda-forge
python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge
python-fastjsonschema 2.16.1 pyhd8ed1ab_0 conda-forge
python_abi 3.8 2_cp38 conda-forge
pyzmq 23.2.1 py38hfc09fa9_0 conda-forge
readline 8.1.2 h0f457ee_0 conda-forge
root 6.26.6 py38h2c36dcf_0 conda-forge
root_base 6.26.6 py38h259b632_0 conda-forge
scitokens-cpp 0.7.1 h0255ffa_0 conda-forge
send2trash 1.8.0 pyhd8ed1ab_0 conda-forge
setuptools 65.3.0 pyhd8ed1ab_1 conda-forge
six 1.16.0 pyh6c4a22f_0 conda-forge
soupsieve 2.3.2.post1 pyhd8ed1ab_0 conda-forge
sqlite 3.39.3 h4ff8645_0 conda-forge
stack_data 0.5.0 pyhd8ed1ab_0 conda-forge
sysroot_linux-64 2.17 h4a8ded7_13 conda-forge
tbb 2021.5.0 h924138e_2 conda-forge
terminado 0.15.0 py38h578d9bd_0 conda-forge
tinycss2 1.1.1 pyhd8ed1ab_0 conda-forge
tk 8.6.12 h27826a3_0 conda-forge
tornado 6.2 py38h0a891b7_0 conda-forge
tqdm 4.64.1 pyhd8ed1ab_0 conda-forge
traitlets 5.3.0 pyhd8ed1ab_0 conda-forge
vdt 0.4.3 h9c3ff4c_0 conda-forge
vector-classes 1.4.3 h924138e_0 conda-forge
wcwidth 0.2.5 pyh9f0ad1d_2 conda-forge
webencodings 0.5.1 py_1 conda-forge
wheel 0.37.1 pyhd8ed1ab_0 conda-forge
xorg-fixesproto 5.0 h7f98852_1002 conda-forge
xorg-kbproto 1.0.7 h7f98852_1002 conda-forge
xorg-libice 1.0.10 h7f98852_0 conda-forge
xorg-libsm 1.2.3 hd9c2040_1000 conda-forge
xorg-libx11 1.6.12 h36c2ea0_0 conda-forge
xorg-libxau 1.0.9 h7f98852_0 conda-forge
xorg-libxcursor 1.2.0 h516909a_0 conda-forge
xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge
xorg-libxext 1.3.4 h516909a_0 conda-forge
xorg-libxfixes 5.0.3 h516909a_1004 conda-forge
xorg-libxft 2.3.4 hc534e41_1 conda-forge
xorg-libxpm 3.5.13 h516909a_0 conda-forge
xorg-libxrender 0.9.10 h516909a_1002 conda-forge
xorg-libxt 1.1.5 h516909a_1003 conda-forge
xorg-renderproto 0.11.1 h7f98852_1002 conda-forge
xorg-xextproto 7.3.0 h7f98852_1002 conda-forge
xorg-xproto 7.0.31 h7f98852_1007 conda-forge
xrootd 5.4.3 py38h92bdfd5_1 conda-forge
xxhash 0.8.0 h7f98852_3 conda-forge
xz 5.2.6 h166bdaf_0 conda-forge
zeromq 4.3.4 h9c3ff4c_1 conda-forge
zipp 3.8.1 pyhd8ed1ab_0 conda-forge
zlib 1.2.12 h166bdaf_2 conda-forge
zstd 1.5.2 h6239696_4 conda-forge
(myrootenv) rgrau@ThinkPad-L15:~$ env
SHELL=/bin/bash
DEBUG_FFLAGS=-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rgrau/miniconda3/envs/myrootenv/include -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-all -fno-plt -Og -g -Wall -Wextra -fcheck=all -fbacktrace -fimplicit-none -fvar-tracking-assignments -ffunction-sections -pipe
SESSION_MANAGER=local/ThinkPad-L15:@/tmp/.ICE-unix/1915,unix/ThinkPad-L15:/tmp/.ICE-unix/1915
QT_ACCESSIBILITY=1
COLORTERM=truecolor
GCC_RANLIB=/home/rgrau/miniconda3/envs/myrootenv/bin/x86_64-conda-linux-gnu-gcc-ranlib
XDG_CONFIG_DIRS=/etc/xdg/xdg-ubuntu:/etc/xdg
XDG_MENU_PREFIX=gnome-
GNOME_DESKTOP_SESSION_ID=this-is-deprecated
CONDA_EXE=/home/rgrau/miniconda3/bin/conda
_CE_M=
build_alias=x86_64-conda-linux-gnu
CMAKE_ARGS=-DCMAKE_AR=/home/rgrau/miniconda3/envs/myrootenv/bin/x86_64-conda-linux-gnu-ar -DCMAKE_CXX_COMPILER_AR=/home/rgrau/miniconda3/envs/myrootenv/bin/x86_64-conda-linux-gnu-gcc-ar -DCMAKE_C_COMPILER_AR=/home/rgrau/miniconda3/envs/myrootenv/bin/x86_64-conda-linux-gnu-gcc-ar -DCMAKE_RANLIB=/home/rgrau/miniconda3/envs/myrootenv/bin/x86_64-conda-linux-gnu-ranlib -DCMAKE_CXX_COMPILER_RANLIB=/home/rgrau/miniconda3/envs/myrootenv/bin/x86_64-conda-linux-gnu-gcc-ranlib -DCMAKE_C_COMPILER_RANLIB=/home/rgrau/miniconda3/envs/myrootenv/bin/x86_64-conda-linux-gnu-gcc-ranlib -DCMAKE_LINKER=/home/rgrau/miniconda3/envs/myrootenv/bin/x86_64-conda-linux-gnu-ld -DCMAKE_STRIP=/home/rgrau/miniconda3/envs/myrootenv/bin/x86_64-conda-linux-gnu-strip
GPROF=/home/rgrau/miniconda3/envs/myrootenv/bin/x86_64-conda-linux-gnu-gprof
LC_ADDRESS=es_ES.UTF-8
CONDA_TOOLCHAIN_BUILD=x86_64-conda-linux-gnu
GNOME_SHELL_SESSION_MODE=ubuntu
_CONDA_PYTHON_SYSCONFIGDATA_NAME=_sysconfigdata_x86_64_conda_cos6_linux_gnu
LC_NAME=es_ES.UTF-8
SSH_AUTH_SOCK=/run/user/1001/keyring/ssh
STRINGS=/home/rgrau/miniconda3/envs/myrootenv/bin/x86_64-conda-linux-gnu-strings
CPP=/home/rgrau/miniconda3/envs/myrootenv/bin/x86_64-conda-linux-gnu-cpp
PYTHIA8DATA=/home/rgrau/miniconda3/envs/myrootenv/share/Pythia8/xmldoc
XMODIFIERS=@im=ibus
DESKTOP_SESSION=ubuntu
LC_MONETARY=es_ES.UTF-8
SSH_AGENT_PID=1859
FFLAGS=-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rgrau/miniconda3/envs/myrootenv/include
GTK_MODULES=gail:atk-bridge
PWD=/home/rgrau
MARSSYS=/home/rgrau/Mars-V2-20-0_old
GSETTINGS_SCHEMA_DIR=/home/rgrau/miniconda3/envs/myrootenv/share/glib-2.0/schemas
LOGNAME=rgrau
XDG_SESSION_DESKTOP=ubuntu
XDG_SESSION_TYPE=x11
CONDA_PREFIX=/home/rgrau/miniconda3/envs/myrootenv
PYTHIA8=/home/rgrau/miniconda3/envs/myrootenv
GPG_AGENT_INFO=/run/user/1001/gnupg/S.gpg-agent:0:1
GSETTINGS_SCHEMA_DIR_CONDA_BACKUP=
CXX=/home/rgrau/miniconda3/envs/myrootenv/bin/x86_64-conda-linux-gnu-c++
CXXFLAGS=-fvisibility-inlines-hidden -std=c++17 -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rgrau/miniconda3/envs/myrootenv/include
XAUTHORITY=/run/user/1001/gdm/Xauthority
CONDA_TOOLCHAIN_HOST=x86_64-conda-linux-gnu
CONDA_BACKUP_ROOTSYS=/home/rgrau/root
DEBUG_CXXFLAGS=-fvisibility-inlines-hidden -std=c++17 -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-all -fno-plt -Og -g -Wall -Wextra -fvar-tracking-assignments -ffunction-sections -pipe -isystem /home/rgrau/miniconda3/envs/myrootenv/include
WINDOWPATH=2
LDFLAGS=-Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/rgrau/miniconda3/envs/myrootenv/lib -Wl,-rpath-link,/home/rgrau/miniconda3/envs/myrootenv/lib -L/home/rgrau/miniconda3/envs/myrootenv/lib
HOME=/home/rgrau
USERNAME=rgrau
IM_CONFIG_PHASE=1
LC_PAPER=es_ES.UTF-8
LANG=en_US.UTF-8
DEBUG_CFLAGS=-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-all -fno-plt -Og -g -Wall -Wextra -fvar-tracking-assignments -ffunction-sections -pipe -isystem /home/rgrau/miniconda3/envs/myrootenv/include
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XDG_CURRENT_DESKTOP=ubuntu:GNOME
VTE_VERSION=6003
CXX_FOR_BUILD=/home/rgrau/miniconda3/envs/myrootenv/bin/x86_64-conda-linux-gnu-c++
OSTYPE=linux-gnu
ELFEDIT=/home/rgrau/miniconda3/envs/myrootenv/bin/x86_64-conda-linux-gnu-elfedit
CONDA_PROMPT_MODIFIER=(myrootenv)
CMAKE_PREFIX_PATH=/home/rgrau/miniconda3/envs/myrootenv:/home/rgrau/miniconda3/envs/myrootenv/x86_64-conda-linux-gnu/sysroot/usr
GNOME_TERMINAL_SCREEN=/org/gnome/Terminal/screen/6f534046_74a8_403c_a464_b22ed5015748
CPPFLAGS=-DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/rgrau/miniconda3/envs/myrootenv/include
LD=/home/rgrau/miniconda3/envs/myrootenv/bin/x86_64-conda-linux-gnu-ld
INVOCATION_ID=4f6ce2f571924559b933a4d9543ff2d8
MANAGERPID=1662
READELF=/home/rgrau/miniconda3/envs/myrootenv/bin/x86_64-conda-linux-gnu-readelf
GXX=/home/rgrau/miniconda3/envs/myrootenv/bin/x86_64-conda-linux-gnu-g++
FC_FOR_BUILD=/home/rgrau/miniconda3/envs/myrootenv/bin/x86_64-conda-linux-gnu-gfortran
GCC_AR=/home/rgrau/miniconda3/envs/myrootenv/bin/x86_64-conda-linux-gnu-gcc-ar
LESSCLOSE=/usr/bin/lesspipe %s %s
ADDR2LINE=/home/rgrau/miniconda3/envs/myrootenv/bin/x86_64-conda-linux-gnu-addr2line
XDG_SESSION_CLASS=user
TERM=xterm-256color
LC_IDENTIFICATION=es_ES.UTF-8
_CE_CONDA=
GCC_NM=/home/rgrau/miniconda3/envs/myrootenv/bin/x86_64-conda-linux-gnu-gcc-nm
SIZE=/home/rgrau/miniconda3/envs/myrootenv/bin/x86_64-conda-linux-gnu-size
F77=/home/rgrau/miniconda3/envs/myrootenv/bin/x86_64-conda-linux-gnu-gfortran
HOST=x86_64-conda-linux-gnu
LESSOPEN=| /usr/bin/lesspipe %s
CC_FOR_BUILD=/home/rgrau/miniconda3/envs/myrootenv/bin/x86_64-conda-linux-gnu-cc
USER=rgrau
GNOME_TERMINAL_SERVICE=:1.101
CONDA_SHLVL=1
AR=/home/rgrau/miniconda3/envs/myrootenv/bin/x86_64-conda-linux-gnu-ar
AS=/home/rgrau/miniconda3/envs/myrootenv/bin/x86_64-conda-linux-gnu-as
DEBUG_CPPFLAGS=-D_DEBUG -D_FORTIFY_SOURCE=2 -Og -isystem /home/rgrau/miniconda3/envs/myrootenv/include
F95=/home/rgrau/miniconda3/envs/myrootenv/bin/x86_64-conda-linux-gnu-f95
F90=/home/rgrau/miniconda3/envs/myrootenv/bin/x86_64-conda-linux-gnu-gfortran
host_alias=x86_64-conda-linux-gnu
DISPLAY=:0
SHLVL=1
NM=/home/rgrau/miniconda3/envs/myrootenv/bin/x86_64-conda-linux-gnu-nm
GCC=/home/rgrau/miniconda3/envs/myrootenv/bin/x86_64-conda-linux-gnu-gcc
DEBUG_FORTRANFLAGS=-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rgrau/miniconda3/envs/myrootenv/include -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-all -fno-plt -Og -g -Wall -Wextra -fcheck=all -fbacktrace -fimplicit-none -fvar-tracking-assignments -ffunction-sections -pipe
LC_TELEPHONE=es_ES.UTF-8
FORTRANFLAGS=-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rgrau/miniconda3/envs/myrootenv/include
QT_IM_MODULE=ibus
LC_MEASUREMENT=es_ES.UTF-8
ROOTSYS=/home/rgrau/miniconda3/envs/myrootenv
LD_GOLD=/home/rgrau/miniconda3/envs/myrootenv/bin/x86_64-conda-linux-gnu-ld.gold
CONDA_PYTHON_EXE=/home/rgrau/miniconda3/bin/python
LD_LIBRARY_PATH=/home/rgrau/root/lib:/home/rgrau/Mars-V2-20-0_old::/home/rgrau/gsl-1.16/lib
XDG_RUNTIME_DIR=/run/user/1001
GFORTRAN=/home/rgrau/miniconda3/envs/myrootenv/bin/x86_64-conda-linux-gnu-gfortran
CONDA_DEFAULT_ENV=myrootenv
OBJCOPY=/home/rgrau/miniconda3/envs/myrootenv/bin/x86_64-conda-linux-gnu-objcopy
LC_TIME=es_ES.UTF-8
FC=/home/rgrau/miniconda3/envs/myrootenv/bin/x86_64-conda-linux-gnu-gfortran
STRIP=/home/rgrau/miniconda3/envs/myrootenv/bin/x86_64-conda-linux-gnu-strip
JOURNAL_STREAM=8:54667
XDG_DATA_DIRS=/usr/share/ubuntu:/home/rgrau/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/:/var/lib/snapd/desktop
OBJDUMP=/home/rgrau/miniconda3/envs/myrootenv/bin/x86_64-conda-linux-gnu-objdump
PATH=/home/rgrau/miniconda3/envs/myrootenv/bin:/home/rgrau/miniconda3/condabin:/home/rgrau/root/bin:/home/rgrau/Mars-V2-20-0_old:/home/rgrau/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/rgrau/gsl/bin
CC=/home/rgrau/miniconda3/envs/myrootenv/bin/x86_64-conda-linux-gnu-cc
GDMSESSION=ubuntu
CFLAGS=-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/rgrau/miniconda3/envs/myrootenv/include
CXXFILT=/home/rgrau/miniconda3/envs/myrootenv/bin/x86_64-conda-linux-gnu-c++filt
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/1001/bus
C_INCLUDE_PATH=:/home/rgrau/gsl-1.16/include
BUILD=x86_64-conda-linux-gnu
PYTHIA8_DIR=/home/rgrau/miniconda3/envs/myrootenv
RANLIB=/home/rgrau/miniconda3/envs/myrootenv/bin/x86_64-conda-linux-gnu-ranlib
CONDA_BUILD_SYSROOT=/home/rgrau/miniconda3/envs/myrootenv/x86_64-conda-linux-gnu/sysroot
LC_NUMERIC=es_ES.UTF-8
_=/usr/bin/env
(myrootenv) rgrau@ThinkPad-L15:~$ root -l -b -q -e '1+1' -x
Fatal in <TROOT::InitInterpreter>: cannot load library /home/rgrau/root/lib/libRIO.so: undefined symbol: _ZN6TNamed11ShowMembersER16TMemberInspector
Hello @eguiraud ,
the installation of root 5 is in the computer, outside any conda environment. I don’t know how to deactivate root 5 when activating the conda environment.
Thank you
I suspect you’ve sourced /home/rgrau/root/bin/thisroot.sh somewhere. (perhaps in your bashrc?)
Does unset LD_LIBRARY_PATH help?
1 Like
It did help and its working now, thank you
system
September 22, 2022, 12:15pm
8
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