Make of installation of v5.18.08 fails

cthies · June 13, 2007, 5:08pm

Hello,

i am trying to compile the current version of root as provided in root_v5.15.08.source.tar.gz using suse linux 9.2 and gcc/g++ version 3.3.4

ROOTSYS is set to the root installation directory

./configure linux

seems to work fine and the Makefile is generated

gmake

also starts and after compilation stops at linking root.exe with the following message

g++ -m32 -O2 -o bin/root.exe main/src/rmain.o
-Llib -lCore -lCint -lRint -lm -ldl -pthread -rdynamic
lib/libCore.so: undefined reference to TCollectionStreamer::TCollectionStreamer[not-in-charge](TCollectionStreamer const&)' lib/libCore.so: undefined reference to typeinfo for TCollectionStreamer’
lib/libCore.so: undefined reference to TCollectionStreamer::~TCollectionStreamer [not-in-charge]()' lib/libCore.so: undefined reference to TCollectionStreamer::Streamer(TBuffer&, void*, int)’
collect2: ld returned 1 exit status
make: *** [bin/root.exe] Fehler 1

Until now i could not figure out any typo in the paths and could use a little hint on what to try next.

Thanks in advance

Christian

cthies · June 14, 2007, 8:10am

Sorry for the typo in the topic it should read 5.15.08.

Compilation of Version 5.14/00f 29 May 2007
works fine.

Christian

pcanal · June 20, 2007, 5:21pm

HI,

Those symbols are supposed to be in lib/libCore.so, coming from cont/src/G__Cont.o … Can you check (using nm)? Also check that
cont/src/G__Cont.cxx is a complete file.

Cheers,
Philippe

kleinb · July 6, 2007, 4:58pm

Hi,

I encounter the same problem with root 5.16.00 under SuSE Linux gcc version 3.3.4.

++ -m32 -O2 -o bin/root.exe main/src/rmain.o
-Llib -lCore -lCint -lRint -lm -ldl -pthread -rdynamic
lib/libCore.so: undefined reference to TCollectionStreamer::TCollectionStreamer[not-in-charge](TCollectionStreamer const&)' lib/libCore.so: undefined reference totypeinfo for TCollectionStreamer’
lib/libCore.so: undefined reference to TCollectionStreamer::~TCollectionStreamer [not-in-charge]()' lib/libCore.so: undefined reference toTCollectionStreamer::Streamer(TBuffer&, void*, int)'
collect2: ld returned 1 exit status

Did you solve your problem?

I did nm on my lib* for root5.15.07 (which compiles fine) and 5.16.00. which does not work:

5.15.07:
pikp76:/usr/local/root/5.15.07 # nm --print-file-name lib/*.so | grep TCollectionStreamer
lib/libRIO.so:0011f558 D G__G__IOLN_TCollectionStreamer
lib/libRIO.so:000d6c3e t _Z34G__setup_memvarTCollectionStreamerv
lib/libRIO.so:000e22f8 t _Z35G__setup_memfuncTCollectionStreamerv
lib/libRIO.so:0011ff68 b _ZGVZN4ROOT25GenerateInitInstanceLocalEPK19TCollectionStreamerE8instance
lib/libRIO.so:0011ff60 b _ZGVZN4ROOT25GenerateInitInstanceLocalEPK19TCollectionStreamerE9isa_proxy
lib/libRIO.so:00030ae6 T _ZN19TCollectionStreamer13AdoptStreamerEP19TGenCollectionProxy
lib/libRIO.so:00030862 T _ZN19TCollectionStreamer17InvalidProxyErrorEv
lib/libRIO.so:00030b12 T _ZN19TCollectionStreamer8StreamerER7TBufferPvi
lib/libRIO.so:0003097e T ZN19TCollectionStreamerC1ERKS
lib/libRIO.so:000308b6 T _ZN19TCollectionStreamerC1Ev
lib/libRIO.so:000308dc T ZN19TCollectionStreamerC2ERKS
lib/libRIO.so:00030890 T _ZN19TCollectionStreamerC2Ev
lib/libRIO.so:00030a9c T _ZN19TCollectionStreamerD0Ev
lib/libRIO.so:00030a5e T _ZN19TCollectionStreamerD1Ev
lib/libRIO.so:00030a20 T _ZN19TCollectionStreamerD2Ev
lib/libRIO.so:0009fd5c T _ZN4ROOT20GenerateInitInstanceEPK19TCollectionStreamer
lib/libRIO.so:000a81c8 t _ZN4ROOT23new_TCollectionStreamerEPv
lib/libRIO.so:0009fbcc t _ZN4ROOT25GenerateInitInstanceLocalEPK19TCollectionStreamer
lib/libRIO.so:000a8508 t _ZN4ROOT26delete_TCollectionStreamerEPv
lib/libRIO.so:000a8592 t _ZN4ROOT28destruct_TCollectionStreamerEPv
lib/libRIO.so:000a82c0 t _ZN4ROOT28newArray_TCollectionStreamerElPv
lib/libRIO.so:0009fd72 t _ZN4ROOT30TCollectionStreamer_DictionaryEv
lib/libRIO.so:000a852c t _ZN4ROOT31deleteArray_TCollectionStreamerEPv
lib/libRIO.so:0011dd88 V _ZTI19TCollectionStreamer
lib/libRIO.so:000ed4e4 V _ZTS19TCollectionStreamer
lib/libRIO.so:0011dcd0 V _ZTV19TCollectionStreamer
lib/libRIO.so:0011ff80 b _ZZN4ROOT25GenerateInitInstanceLocalEPK19TCollectionStreamerE8instance
lib/libRIO.so:0011ff70 b _ZZN4ROOT25GenerateInitInstanceLocalEPK19TCollectionStreamerE9isa_proxy

root 5.16.00
pikp76:/usr/local/root/5.16.00 # nm --print-file-name lib/*.so | grep TCollectionStreamer
lib/libCore.so: U _ZN19TCollectionStreamer8StreamerER7TBufferPvi
lib/libCore.so: U ZN19TCollectionStreamerC2ERKS
lib/libCore.so: U _ZN19TCollectionStreamerD2Ev
lib/libCore.so: U _ZTI19TCollectionStreamer
lib/libRIO.so:0010dd5c D G__G__IOLN_TCollectionStreamer
lib/libRIO.so:000c9a2e t _Z34G__setup_memvarTCollectionStreamerv
lib/libRIO.so:000d4bda t _Z35G__setup_memfuncTCollectionStreamerv
lib/libRIO.so:0010e728 b _ZGVZN4ROOT25GenerateInitInstanceLocalEPK19TCollectionStreamerE8instance
lib/libRIO.so:0010e720 b _ZGVZN4ROOT25GenerateInitInstanceLocalEPK19TCollectionStreamerE9isa_proxy
lib/libRIO.so:0002eb60 T _ZN19TCollectionStreamer13AdoptStreamerEP19TGenCollectionProxy
lib/libRIO.so:0002ecd0 T _ZN19TCollectionStreamer17InvalidProxyErrorEv
lib/libRIO.so:0002ed00 T _ZN19TCollectionStreamer8StreamerER7TBufferPvi
lib/libRIO.so:0002ed80 T ZN19TCollectionStreamerC1ERKS
lib/libRIO.so:0002eb30 T _ZN19TCollectionStreamerC1Ev
lib/libRIO.so:0002ee40 T ZN19TCollectionStreamerC2ERKS
lib/libRIO.so:0002eb00 T _ZN19TCollectionStreamerC2Ev
lib/libRIO.so:0002ebd0 T _ZN19TCollectionStreamerD0Ev
lib/libRIO.so:0002ec30 T _ZN19TCollectionStreamerD1Ev
lib/libRIO.so:0002ec80 T _ZN19TCollectionStreamerD2Ev
lib/libRIO.so:000a4c40 T _ZN4ROOT20GenerateInitInstanceEPK19TCollectionStreamer
lib/libRIO.so:000ad0ac t _ZN4ROOT23new_TCollectionStreamerEPv
lib/libRIO.so:000a4ab0 t _ZN4ROOT25GenerateInitInstanceLocalEPK19TCollectionStreamer
lib/libRIO.so:000ad3ec t _ZN4ROOT26delete_TCollectionStreamerEPv
lib/libRIO.so:000ad476 t _ZN4ROOT28destruct_TCollectionStreamerEPv
lib/libRIO.so:000ad1a4 t _ZN4ROOT28newArray_TCollectionStreamerElPv
lib/libRIO.so:000a4c56 t _ZN4ROOT30TCollectionStreamer_DictionaryEv
lib/libRIO.so:000ad410 t _ZN4ROOT31deleteArray_TCollectionStreamerEPv
lib/libRIO.so:0010c428 V _ZTI19TCollectionStreamer
lib/libRIO.so:000dfab8 V _ZTS19TCollectionStreamer
lib/libRIO.so:0010c418 V _ZTV19TCollectionStreamer
lib/libRIO.so:0010e740 b _ZZN4ROOT25GenerateInitInstanceLocalEPK19TCollectionStreamerE8instance
lib/libRIO.so:0010e730 b _ZZN4ROOT25GenerateInitInstanceLocalEPK19TCollectionStreamerE9isa_proxy
lib/libTree.so: U _ZN19TCollectionStreamer8StreamerER7TBufferPvi
lib/libTree.so: U ZN19TCollectionStreamerC2ERKS
lib/libTree.so: U _ZN19TCollectionStreamerD2Ev
lib/libTree.so: U _ZTI19TCollectionStreamer

Hmm so undefined in libCore and libTree.

Any help is appreciated.

Best Regards

Christian

pcanal · July 9, 2007, 2:13pm

Strange

What is the result of:nm --print-file-name */src/*.so | grep TCollectionStreamer

[Aka I suspect that there is a left over .o files that was not removed even though its source file was move to a different directory]

Cheers,
Philippe

kleinb · July 9, 2007, 7:08pm

nm --print-file-name /src/.o | grep TCollectionStreamer
yields:

io/src/G__IO.o:00000120 D G__G__IOLN_TCollectionStreamer
io/src/G__IO.o:00025c7a t _Z34G__setup_memvarTCollectionStreamerv
io/src/G__IO.o:00030e26 t _Z35G__setup_memfuncTCollectionStreamerv
io/src/G__IO.o:00000448 b _ZGVZN4ROOT25GenerateInitInstanceLocalEPK19TCollectionStreamerE8instance
io/src/G__IO.o:00000440 b _ZGVZN4ROOT25GenerateInitInstanceLocalEPK19TCollectionStreamerE9isa_proxy
io/src/G__IO.o: U _ZN19TCollectionStreamer13AdoptStreamerEP19TGenCollectionProxy
io/src/G__IO.o: U _ZN19TCollectionStreamer8StreamerER7TBufferPvi
io/src/G__IO.o: U ZN19TCollectionStreamerC1ERKS
io/src/G__IO.o: U _ZN19TCollectionStreamerC1Ev
io/src/G__IO.o: U ZN19TCollectionStreamerC2ERKS
io/src/G__IO.o: U _ZN19TCollectionStreamerC2Ev
io/src/G__IO.o: U _ZN19TCollectionStreamerD2Ev
io/src/G__IO.o:00000e8c T _ZN4ROOT20GenerateInitInstanceEPK19TCollectionStreamer
io/src/G__IO.o:000092f8 t _ZN4ROOT23new_TCollectionStreamerEPv
io/src/G__IO.o:00000cfc t _ZN4ROOT25GenerateInitInstanceLocalEPK19TCollectionStreamer
io/src/G__IO.o:00009638 t _ZN4ROOT26delete_TCollectionStreamerEPv
io/src/G__IO.o:000096c2 t _ZN4ROOT28destruct_TCollectionStreamerEPv
io/src/G__IO.o:000093f0 t _ZN4ROOT28newArray_TCollectionStreamerElPv
io/src/G__IO.o:00000ea2 t _ZN4ROOT30TCollectionStreamer_DictionaryEv
io/src/G__IO.o:0000965c t _ZN4ROOT31deleteArray_TCollectionStreamerEPv
io/src/G__IO.o: U _ZTI19TCollectionStreamer
io/src/G__IO.o:00000460 b _ZZN4ROOT25GenerateInitInstanceLocalEPK19TCollectionStreamerE8instance
io/src/G__IO.o:00000450 b _ZZN4ROOT25GenerateInitInstanceLocalEPK19TCollectionStreamerE9isa_proxy
io/src/TCollectionProxyFactory.o:00000060 T _ZN19TCollectionStreamer13AdoptStreamerEP19TGenCollectionProxy
io/src/TCollectionProxyFactory.o:000001d0 T _ZN19TCollectionStreamer17InvalidProxyErrorEv
io/src/TCollectionProxyFactory.o:00000200 T _ZN19TCollectionStreamer8StreamerER7TBufferPvi
io/src/TCollectionProxyFactory.o:00000280 T ZN19TCollectionStreamerC1ERKS
io/src/TCollectionProxyFactory.o:00000030 T _ZN19TCollectionStreamerC1Ev
io/src/TCollectionProxyFactory.o:00000340 T ZN19TCollectionStreamerC2ERKS
io/src/TCollectionProxyFactory.o:00000000 T _ZN19TCollectionStreamerC2Ev
io/src/TCollectionProxyFactory.o:000000d0 T _ZN19TCollectionStreamerD0Ev
io/src/TCollectionProxyFactory.o:00000130 T _ZN19TCollectionStreamerD1Ev
io/src/TCollectionProxyFactory.o:00000180 T _ZN19TCollectionStreamerD2Ev
io/src/TCollectionProxyFactory.o:00000000 V _ZTI19TCollectionStreamer
io/src/TCollectionProxyFactory.o:00000000 V _ZTS19TCollectionStreamer
io/src/TCollectionProxyFactory.o:00000000 V _ZTV19TCollectionStreamer
io/src/TEmulatedCollectionProxy.o: U _ZN19TCollectionStreamer8StreamerER7TBufferPvi
io/src/TEmulatedCollectionProxy.o: U ZN19TCollectionStreamerC2ERKS
io/src/TEmulatedCollectionProxy.o: U _ZN19TCollectionStreamerD2Ev
io/src/TEmulatedCollectionProxy.o: U _ZTI19TCollectionStreamer
io/src/TEmulatedMapProxy.o: U _ZN19TCollectionStreamer8StreamerER7TBufferPvi
io/src/TEmulatedMapProxy.o: U ZN19TCollectionStreamerC2ERKS
io/src/TEmulatedMapProxy.o: U _ZN19TCollectionStreamerD2Ev
io/src/TEmulatedMapProxy.o: U _ZTI19TCollectionStreamer
io/src/TGenCollectionProxy.o: U _ZN19TCollectionStreamer8StreamerER7TBufferPvi
io/src/TGenCollectionProxy.o: U ZN19TCollectionStreamerC2ERKS
io/src/TGenCollectionProxy.o: U _ZN19TCollectionStreamerD2Ev
io/src/TGenCollectionProxy.o: U _ZTI19TCollectionStreamer
io/src/TGenCollectionStreamer.o: U _ZN19TCollectionStreamer8StreamerER7TBufferPvi
io/src/TGenCollectionStreamer.o: U ZN19TCollectionStreamerC2ERKS
io/src/TGenCollectionStreamer.o: U _ZN19TCollectionStreamerD2Ev
io/src/TGenCollectionStreamer.o: U _ZTI19TCollectionStreamer
io/src/TStreamerInfo.o: U _ZN19TCollectionStreamer8StreamerER7TBufferPvi
io/src/TStreamerInfo.o: U ZN19TCollectionStreamerC2ERKS
io/src/TStreamerInfo.o: U _ZN19TCollectionStreamerD2Ev
io/src/TStreamerInfo.o: U _ZTI19TCollectionStreamer
meta/src/TClass.o: U _ZN19TCollectionStreamer8StreamerER7TBufferPvi
meta/src/TClass.o: U ZN19TCollectionStreamerC2ERKS
meta/src/TClass.o: U _ZN19TCollectionStreamerD2Ev
meta/src/TClass.o: U _ZTI19TCollectionStreamer
tree/src/ManualTree2.o: U _ZN19TCollectionStreamer8StreamerER7TBufferPvi
tree/src/ManualTree2.o: U ZN19TCollectionStreamerC2ERKS
tree/src/ManualTree2.o: U _ZN19TCollectionStreamerD2Ev
tree/src/ManualTree2.o: U _ZTI19TCollectionStreamer
tree/src/TTree.o: U _ZN19TCollectionStreamer8StreamerER7TBufferPvi
tree/src/TTree.o: U ZN19TCollectionStreamerC2ERKS
tree/src/TTree.o: U _ZN19TCollectionStreamerD2Ev
tree/src/TTree.o: U _ZTI19TCollectionStreamer

I circumvented the problem by adding -lRIO
in the Makefile to BOOTLIBS
BOOTLIBS := -lCore -lCint -lRIO but that is not really clean …

Cheers

Christian

pcanal · July 9, 2007, 8:38pm

[quote]meta/src/TClass.o: U _ZN19TCollectionStreamer8StreamerER7TBufferPvi [/quote]Very odd!.
Can you try to delete this file, rebuild and retry the nm?
If the result is the same can you send the result of using the -E option (aka take the command line that creates TClass.o, replace the part -o meta/src/TClass.o with -E -o meta/src/TClass.E) and send me the result (the file TClass.E).

Cheers,
Philippe

kleinb · July 12, 2007, 8:49am

Hi Phillippe,

No change when I delete and build it again, I attached the TClass.E file.

Thanks a lot for your efforts

Christian
TClass.E.txt (1.27 MB)

pcanal · July 12, 2007, 6:58pm

Hi,

This problem has been solved in the head of the CVS repository (by removing the now unnecessary (and usually (except in your case) harmless) #include “TGenCollectionProxy.h” from TClass.cxx

Cheers,
Philippe

kleinb · July 13, 2007, 7:00am

Great, Thanks a lot

Christian