Issue with ROOT installation from Miniconda


_ROOT Version: 6.24.6
_Platform: OS (Big Sur 11.6.1)
_Compiler: from Conda

Hi, I have been using the root from the conda quite for a while (along with other packages). I think since my OS got updated last time, I have been getting this issue when trying to run the root interactively or my codes compiled against root libraries:

input_line_1:1:2:* error: *module ‘Darwin’ uses additional module map ‘/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/mach_debug.modulemap’ used

when the module was built

#include

^

input_line_1:1:2: note: imported by module ‘std’ in ‘/Users/abashyal/opt/miniconda3/lib/std.pcm’

Warning in cling::IncrementalParser::CheckABICompatibility():

Failed to extract C++ standard library version.

Warning in cling::IncrementalParser::CheckABICompatibility():

Possible C++ standard library mismatch, compiled with _LIBCPP_ABI_VERSION ‘1’

Extraction of runtime standard library version was: ‘’

input_line_2:1:2:* fatal error: *module file ‘/Users/abashyal/opt/miniconda3/lib/std.pcm’ is out of date and needs to be rebuilt

#include “cling/Interpreter/RuntimeUniverse.h”

^

input_line_2:1:2: note: imported by module ‘Cling_Runtime_Extra’ in ‘/Users/abashyal/opt/miniconda3/lib/Cling_Runtime_Extra.pcm’

input_line_2:1:2: note: imported by module ‘Cling_Runtime’ in ‘/Users/abashyal/opt/miniconda3/lib/Cling_Runtime.pcm’

Replaced symbol atexit cannot be found in JIT!

Replaced symbol at_quick_exit cannot be found in JIT!

*< cling interactive line includer >>>: fatal error: *module file ‘/Users/abashyal/opt/miniconda3/lib/Darwin.pcm’ is out of date and needs to be rebuilt

Failed to load module Darwin

Failed to load module std

Failed to load module _Builtin_intrinsics

Failed to load module ROOT_Foundation_C

Failed to load module ROOT_Config

Failed to load module ROOT_Rtypes

Failed to load module ROOT_Foundation_Stage1_NoRTTI

Failed to load module Core

Failed to load module Rint

Failed to load module RIO

Failed to load module MathCore

Failed to load module Hist

Failed to load module Darwin

Failed to load module Unfold

Failed to load module Imt

Failed to load module HistPainter

Failed to load module PyMVA

Failed to load module RHTTPSniff

Failed to load module RDAVIX

Failed to load module RHTTP

Failed to load module FitPanel

Failed to load module ROOTVecOps

Failed to load module ProofDraw

Failed to load module ROOTBrowsable

Failed to load module Quadp

Failed to load module ROOT_Foundation_Stage1_NoRTTI

Failed to load module GeomPainter

Failed to load module Genetic

Failed to load module Eve

Failed to load module TreeViewer

Failed to load module Physics

Failed to load module ROOTNTuple

Failed to load module EG

Failed to load module Tree

Failed to load module HistFactory

Failed to load module Spectrum

Failed to load module Matrix

Failed to load module Html

Failed to load module Hist

Failed to load module GuiHtml

Failed to load module _Builtin_intrinsics

Failed to load module Gpad

Failed to load module TMVAGui

Failed to load module ROOTEve

Failed to load module Fumili

Failed to load module Net

Failed to load module RGL

Failed to load module Geom

Failed to load module Postscript

Failed to load module GCocoa

Failed to load module ROOTGpadv7

Failed to load module RCsg

Failed to load module Cling_Runtime

Failed to load module SPlot

Failed to load module EGPythia8

Failed to load module GeomBuilder

Failed to load module RooFit

Failed to load module ROOT_Config

Failed to load module RooFitMore

Failed to load module Rint

Failed to load module XMLParser

Failed to load module MultiProc

Failed to load module RooStats

Failed to load module Proof

Failed to load module FITSIO

Failed to load module Ged

Failed to load module Recorder

Failed to load module FFTW

Failed to load module GuiBld

Failed to load module Vc

Failed to load module ROOTWebDisplay

Failed to load module RooFitCore

Failed to load module Gui

Failed to load module SQLIO

Failed to load module XMLIO

Failed to load module ROOT_Rtypes

Failed to load module std

Failed to load module ROOTHistDraw

Failed to load module RIO

Failed to load module ProofPlayer

Failed to load module ASImage

Failed to load module ROOT_Foundation_C

Failed to load module MathMore

Failed to load module Foam

Failed to load module RSQLite

Failed to load module SpectrumPainter

Failed to load module Minuit2

Failed to load module Core

Failed to load module MLP

Failed to load module ROOTDataFrame

Failed to load module GenVector

Failed to load module NetxNG

Failed to load module ROOTBrowserv7

Failed to load module Minuit

Failed to load module RootAuth

Failed to load module Graf3d

Failed to load module TMVA

Failed to load module ASImageGui

Failed to load module Graf

Failed to load module Gdml

Failed to load module ProofBench

Failed to load module Cling_Runtime_Extra

Failed to load module MathCore

Failed to load module Gviz3d

Failed to load module WebGui6

Failed to load module ROOTTPython

Failed to load module ROOTHist

Failed to load module TreePlayer

Failed to load module ROOTGraphicsPrimitives

Failed to load module Gviz

Failed to load module ROOTFitPanelv7

Failed to load module Smatrix

Failed to load module SessionViewer

Failed to load module Thread

Assertion failed: (clingInterp.getMacro(“gROOT”) && “Couldn’t load gROOT macro?”), function RegisterCxxModules, file /Users/runner/miniforge3/conda-bld/root_base_1630711534736/work/root-source/core/metacling/src/TCling.cxx, line 1313.

I saw a similar post in the ROOT forum from November but it seemed to be related to Xcode 13.0 versus Xcode 13.1 . I am wondering if there is a fix for the ROOT installed from conda as well.

Thanks.


Hi @abashyal ,
and welcome to the ROOT forum.
Please try removing the environment and installing ROOT again from scratch.
If that does not work, please report the issue at github.com/conda-forge/root-feedstock/issues .

@chrisburr might have better suggestions.
Cheers,
Enrico

Thanks @eguiraud. Thanks for the suggestion. I have opened a new issue in the conda-forge channel as well.

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