Hello,
I have recently upgraded my system to Mac OS 15.
I am re-installing the root from the source on this system (Macbook Pro Intel).
However, I am getting this error:
fatal error: cyclic dependency in module 'std': std -> _wctype -> __wctype -> std
#include <ctype.h>
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.0.sdk/usr/include/_wctype.h:36:10: fatal error: could not build module '__wctype'
#include <_types/_wctrans_t.h>
May I know how I should solve this issue?
Here are the details:
- The cmake version 3.30.3
- Root configuration:
cmake -DCMAKE_INSTALL_PREFIX=/Users/arkasantra/Root6_Install -DPython3_EXECUTABLE=python3 -DPython2_EXECUTABLE=python2 -DCMAKE_CXX_STANDARD=20 -Dbuiltin_nlohmannjson=ON -Dhttp=ON -Droot7=ON -Dbuiltin_xrootd=ON -Dxrootd=ON -Dbuiltin_glew=ON /Users/arkasantra/root-6.32.04
- Configuration output:
CMake Deprecation Warning at CMakeLists.txt:35 (cmake_policy):
The OLD behavior for policy CMP0116 will be removed from a future version
of CMake.
The cmake-policies(7) manual explains that the OLD behaviors of all
policies are deprecated and that a policy should be set to OLD only under
specific short-term circumstances. Projects should be ported to the NEW
behavior and not rely on setting a policy to OLD.
-- The C compiler identification is AppleClang 16.0.0.16000026
-- The CXX compiler identification is AppleClang 16.0.0.16000026
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found Git: /usr/bin/git (found version "2.39.5 (Apple Git-154)")
CMake Warning at cmake/modules/SetROOTVersion.cmake:85 (message):
GIT_DESCRIBE_ALL is ``·with a format unexpected for tags. Not setting the
commit.
Call Stack (most recent call first):
cmake/modules/SetROOTVersion.cmake:99 (SET_ROOT_VERSION)
CMakeLists.txt:75 (include)
-- Building ROOT version 6.32.04
-- Checking internet connectivity
-- Checking internet connectivity - found
-- Looking for a CUDA compiler
-- Looking for a CUDA compiler - NOTFOUND
-- The default C++ standard in use by the detected compiler (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++) is lower than C++17. Setting C++17 as the minimum standard.
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Found a macOS system 15.0
-- Found an x86_64 system
-- Performing Test GLIBCXX_USE_CXX11_ABI
-- Performing Test GLIBCXX_USE_CXX11_ABI - Failed
-- ROOT default compression algorithm: zlib
-- Cannot enable cudnn without enabling cuda or tmva-gpu: cudnn is disabled.
-- Looking for ZLib
-- Found ZLIB: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.0.sdk/usr/lib/libz.tbd (found version "1.2.12")
-- Building freetype version 2.12.1 included in ROOT itself
-- Looking for PCRE
-- Found PCRE2: /usr/local/include (found version "10.44")
-- Looking for LZMA
-- Looking for lzma_auto_decoder in /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.0.sdk/usr/lib/liblzma.tbd
-- Looking for lzma_auto_decoder in /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.0.sdk/usr/lib/liblzma.tbd - found
-- Looking for lzma_easy_encoder in /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.0.sdk/usr/lib/liblzma.tbd
-- Looking for lzma_easy_encoder in /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.0.sdk/usr/lib/liblzma.tbd - found
-- Looking for lzma_lzma_preset in /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.0.sdk/usr/lib/liblzma.tbd
-- Looking for lzma_lzma_preset in /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.0.sdk/usr/lib/liblzma.tbd - found
-- Found LibLZMA: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.0.sdk/usr/lib/liblzma.tbd (found version "5.6.2")
-- Looking for xxHash
-- Could NOT find xxHash (missing: xxHash_LIBRARY xxHash_INCLUDE_DIR) (Required is at least version "0.8")
-- xxHash not found. Switching on builtin_xxhash option
-- Looking for ZSTD
-- Found ZSTD: /usr/local/lib/libzstd.dylib
-- Looking for LZ4
-- Found LZ4: /usr/local/lib/liblz4.dylib (found version "1.10.0")
-- Found GIF: /usr/local/lib/libgif.dylib (found version "5.2.2")
-- Found TIFF: /usr/local/lib/libtiff.dylib (found version "4.6.0")
-- Found PNG: /usr/local/lib/libpng.dylib (found version "1.6.43")
-- Found JPEG: /usr/local/lib/libjpeg.dylib (found version "80")
-- Building AfterImage library included in ROOT itself
-- Looking for Python
-- Found Python3: /opt/anaconda3/bin/python3.11 (found suitable version "3.11.7", minimum required is "3.8") found components: Interpreter Development NumPy Development.Module Development.Embed
-- Looking for OpenGL
-- Found OpenGL: /usr/X11R6/lib/libGL.dylib
-- Looking for gl2ps
-- Could NOT find gl2ps (missing: GL2PS_LIBRARY GL2PS_INCLUDE_DIR)
-- gl2ps not found. Switching on builtin_gl2ps option
-- Looking for LibXml2
-- Found LibXml2: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.0.sdk/usr/lib/libxml2.tbd (found version "2.9.4")
-- Found OpenSSL: /usr/local/Cellar/openssl@3/3.3.1/lib/libcrypto.dylib (found version "3.3.1")
-- Looking for MySQL
-- Found MySQL: /opt/anaconda3/include/mysql
-- Looking for PostgreSQL
-- Could NOT find PostgreSQL (missing: PostgreSQL_LIBRARY PostgreSQL_INCLUDE_DIR)
-- PostgreSQL not found. Switching off pgsql option
-- Looking for SQLite
-- Found PkgConfig: /usr/local/bin/pkg-config (found version "0.29.2")
-- Found Sqlite: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.0.sdk/usr/include
-- Looking for CFITSIO
-- Found CFITSIO: /usr/local/lib/libcfitsio.dylib (found version "4.4")
-- Downloading and building XROOTD version 5.5.2
-- Could NOT find FTGL (missing: FTGL_INCLUDE_DIR FTGL_LIBRARY)
-- ftgl library not found. Set variable FTGL_ROOT_DIR to point to your installation
-- For the time being switching ON 'builtin_ftgl' option
-- Checking for module 'davix>=0.6.4'
-- Found davix, version 0.8.7
-- Looking for TBB
-- Found TBB: /usr/local (found suitable version "2021.13", minimum required is "2020")
-- Looking for VDT
-- Could NOT find Vdt (missing: VDT_INCLUDE_DIR VDT_LIBRARY) (Required is at least version "0.4")
-- VDT not found. Ensure that the installation of VDT is in the CMAKE_PREFIX_PATH
-- Switching ON 'builtin_vdt' option
-- Looking for BLAS for optional parts of TMVA
-- Looking for sgemm_
-- Looking for sgemm_ - not found
-- Looking for dgemm_
-- Looking for dgemm_ - found
-- Found BLAS: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.0.sdk/System/Library/Frameworks/Accelerate.framework
-- PyROOT: development package found. Building for version 3.11.7
-- Performing Test ROOT_HAVE_CXX_ATOMICS_WITHOUT_LIB
-- Performing Test ROOT_HAVE_CXX_ATOMICS_WITHOUT_LIB - Success
-- Building LLVM in 'Release' mode.
CMake Deprecation Warning at interpreter/llvm-project/cmake/Modules/CMakePolicy.cmake:6 (cmake_policy):
The OLD behavior for policy CMP0114 will be removed from a future version
of CMake.
The cmake-policies(7) manual explains that the OLD behaviors of all
policies are deprecated and that a policy should be set to OLD only under
specific short-term circumstances. Projects should be ported to the NEW
behavior and not rely on setting a policy to OLD.
Call Stack (most recent call first):
interpreter/llvm-project/llvm/CMakeLists.txt:6 (include)
CMake Deprecation Warning at interpreter/llvm-project/cmake/Modules/CMakePolicy.cmake:11 (cmake_policy):
The OLD behavior for policy CMP0116 will be removed from a future version
of CMake.
The cmake-policies(7) manual explains that the OLD behaviors of all
policies are deprecated and that a policy should be set to OLD only under
specific short-term circumstances. Projects should be ported to the NEW
behavior and not rely on setting a policy to OLD.
Call Stack (most recent call first):
interpreter/llvm-project/llvm/CMakeLists.txt:6 (include)
-- The ASM compiler identification is AppleClang
-- Found assembler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc
-- bolt project is disabled
-- clang project is enabled
-- clang-tools-extra project is disabled
-- compiler-rt project is disabled
-- cross-project-tests project is disabled
-- libc project is disabled
-- libclc project is disabled
-- lld project is disabled
-- lldb project is disabled
-- mlir project is disabled
-- openmp project is disabled
-- polly project is disabled
-- pstl project is disabled
-- flang project is disabled
-- Found libtool - /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/libtool
-- Found Python3: /opt/anaconda3/bin/python3.11 (found suitable version "3.11.7", minimum required is "3.0") found components: Interpreter
-- Found LibEdit: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.0.sdk/usr/include (found version "2.11")
-- Found Terminfo: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.0.sdk/usr/lib/libcurses.tbd
-- The xar file format has been deprecated: LLVM_HAVE_LIBXAR might be removed in the future.
-- Looking for backtrace
-- Looking for backtrace - found
-- backtrace facility detected in default set of libraries
-- Found Backtrace: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.0.sdk/usr/include
-- Native target architecture is X86
-- Threads disabled.
-- Doxygen disabled.
-- Found ld64 - /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld
-- Could NOT find OCaml (missing: OCAMLFIND OCAML_VERSION OCAML_STDLIB_PATH)
-- OCaml bindings disabled.
-- Found Python module pygments
-- Found Python module pygments.lexers.c_cpp
-- Found Python module yaml
-- LLVM host triple: x86_64-apple-darwin24.0.0
-- LLVM default target triple: x86_64-apple-darwin24.0.0
-- Building with -fPIC
-- Linker detection: unknown
-- Targeting X86
-- Targeting NVPTX
CMake Deprecation Warning at interpreter/llvm-project/cmake/Modules/CMakePolicy.cmake:6 (cmake_policy):
The OLD behavior for policy CMP0114 will be removed from a future version
of CMake.
The cmake-policies(7) manual explains that the OLD behaviors of all
policies are deprecated and that a policy should be set to OLD only under
specific short-term circumstances. Projects should be ported to the NEW
behavior and not rely on setting a policy to OLD.
Call Stack (most recent call first):
interpreter/llvm-project/clang/CMakeLists.txt:6 (include)
CMake Deprecation Warning at interpreter/llvm-project/cmake/Modules/CMakePolicy.cmake:11 (cmake_policy):
The OLD behavior for policy CMP0116 will be removed from a future version
of CMake.
The cmake-policies(7) manual explains that the OLD behaviors of all
policies are deprecated and that a policy should be set to OLD only under
specific short-term circumstances. Projects should be ported to the NEW
behavior and not rely on setting a policy to OLD.
Call Stack (most recent call first):
interpreter/llvm-project/clang/CMakeLists.txt:6 (include)
-- Clang version: 16.0.6
-- Host linker version: 1115.7.3
-- Building Cling as part of ROOT
-- Cling version (from VERSION file): ROOT_1.1~dev
-- Cling will look for C++ headers in '/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.0.sdk/usr/include/c++/v1' at runtime.
-- And if not found, will invoke: '/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -isysroot;/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.0.sdk' for them.
CMake Warning at cmake/modules/SetROOTVersion.cmake:85 (message):
GIT_DESCRIBE_ALL is ``·with a format unexpected for tags. Not setting the
commit.
Call Stack (most recent call first):
cmake/modules/SetROOTVersion.cmake:99 (SET_ROOT_VERSION)
core/CMakeLists.txt:11 (include)
-- Performing Test CXX_HAS_fno_rtti
-- Performing Test CXX_HAS_fno_rtti - Success
-- Performing Test found_arc4
-- Performing Test found_arc4 - Success
-- Found arc4random_buf in stdlib.h
-- Performing Test C_HAS_Wno_strict_overflow
-- Performing Test C_HAS_Wno_strict_overflow - Success
-- Performing Test C_HAS_Wno_maybe_uninitialized
-- Performing Test C_HAS_Wno_maybe_uninitialized - Failed
-- Performing Test C_HAS_Wno_parentheses_equality
-- Performing Test C_HAS_Wno_parentheses_equality - Success
-- Looking for m
-- Looking for m - not found
CMake Warning at net/http/CMakeLists.txt:90 (MESSAGE):
Not able to recognize SSL version 3.3.1, disable SSL
-- Performing Test GCC_HAS_BIDI_CHARS_FLAG
-- Performing Test GCC_HAS_BIDI_CHARS_FLAG - Failed
-- Distributed RDataFrame enabled
-- RapidYAML not found, only compiling RooFit with nlohmann-json parser
-- Found CHROME executable /Applications/Google Chrome.app/Contents/MacOS/Google Chrome major version 128
-- Performing Test found_setresuid
-- Performing Test found_setresuid - Failed
-- Performing Test found_attribute_always_inline
-- Performing Test found_attribute_always_inline - Success
-- Performing Test has_found_attribute_noinline
-- Performing Test has_found_attribute_noinline - Success
-- Performing Test found_hardware_interference_size
-- Performing Test found_hardware_interference_size - Failed
Running /Users/arkasantra/root-6.32.04/build/unix/compiledata.sh
Making /Users/arkasantra/Root6_Build/ginclude/compiledata.h
-- ROOT Configuration
System: Darwin-24.0.0
ROOT Platform: macosx
ROOT Architecture: macosx64
Processor: 8 core Intel(R) Core(TM) i9-9880H CPU @ 2.30GHz (x86_64)
Build type: Release
Install path: /Users/arkasantra/Root6_Install
Compiler: AppleClang 16.0.0.16000026
C++ standard: 20
Compiler flags:
- C: -m64 -pipe -W -Wall -fsigned-char -fno-common -Qunused-arguments -pthread
- C (built type specific): -O3 -DNDEBUG
- C++: -Wc++11-narrowing -Wsign-compare -Wsometimes-uninitialized -Wconditional-uninitialized -Wheader-guard -Warray-bounds -Wcomment -Wtautological-compare -Wstrncat-size -Wloop-analysis -Wbool-conversion -m64 -pipe -W -Wall -Woverloaded-virtual -fsigned-char -fno-common -Qunused-arguments -pthread -stdlib=libc++
- C++ (built type specific): -O3 -DNDEBUG
Linker flags:
- Executable: -L/usr/local/opt/qt@5/lib -mmacosx-version-min=15.0
- Module: -L/usr/local/opt/qt@5/lib
- Shared: -L/usr/local/opt/qt@5/lib
-- Enabled support for: asimage builtin_afterimage builtin_clang builtin_cling builtin_freetype builtin_ftgl builtin_gl2ps builtin_glew builtin_llvm builtin_nlohmannjson builtin_openui5 builtin_vdt builtin_xrootd builtin_xxhash clad cocoa dataframe davix fitsio gdml http imt libcxx mysql opengl pyroot roofit webgui root7 rpath runtime_cxxmodules shared sqlite ssl tmva tmva-cpu tmva-pymva spectrum vdt xml xrootd
-- Configuring done (67.3s)
-- Generating done (12.4s)
-- Build files have been written to: /Users/arkasantra/Root6_Build
- Error after applying
cmake --build . -j8
[ 73%] Built target MetaCling
While building module 'Core':
While building module 'std' imported from input_line_1:1:
While building module '_wctype' imported from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/wctype.h:31:
While building module '__wctype' imported from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.0.sdk/usr/include/_wctype.h:36:
In file included from <module-includes>:1:
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.0.sdk/usr/include/___wctype.h:72:10: fatal error: cyclic dependency in module 'std': std -> _wctype -> __wctype -> std
#include <ctype.h>
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.0.sdk/usr/include/_wctype.h:36:10: fatal error: could not build module '__wctype'
#include <_types/_wctrans_t.h>
~~~~~~~~^
While building module 'Core':
While building module 'std' imported from input_line_1:1:
In file included from <module-includes>:1:
In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.0.sdk/usr/include/c++/v1/algorithm:1804:
In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.0.sdk/usr/include/c++/v1/__algorithm/find.h:31:
In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.0.sdk/usr/include/c++/v1/cwchar:112:
In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.0.sdk/usr/include/c++/v1/cwctype:56:
In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.0.sdk/usr/include/c++/v1/wctype.h:68:
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/wctype.h:31:10: fatal error: could not build module '_wctype'
#include <_wctype.h>
~~~~~~~~^
While building module 'Core':
While building module 'std' imported from input_line_1:1:
While building module '_wchar' imported from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/wchar.h:67:
In file included from <module-includes>:1:
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.0.sdk/usr/include/_wchar.h:76:10: fatal error: could not build module '__wctype'
#include <sys/_types/_mbstate_t.h>
~~~~~~~~^
input_line_1:1:10: fatal error: could not build module 'std'
#include <new>
~~~~~~~~^
Warning in cling::IncrementalParser::CheckABICompatibility():
Failed to extract C++ standard library version.
Warning in cling::IncrementalParser::CheckABICompatibility():
Possible C++ standard library mismatch, compiled with _LIBCPP_ABI_VERSION '1'
Extraction of runtime standard library version was: ''
While building module 'Core':
While building module 'Cling_Runtime' imported from input_line_2:1:
While building module 'Cling_Runtime_Extra' imported from /Users/arkasantra/Root6_Build/etc/cling/Interpreter/RuntimeUniverse.h:27:
In file included from <module-includes>:1:
/Users/arkasantra/Root6_Build/etc/cling/Interpreter/DynamicExprInfo.h:13:10: fatal error: could not build module 'std'
#include <string>
~~~~~~~~^
/Users/arkasantra/Root6_Build/etc/cling/Interpreter/RuntimeUniverse.h:27:10: fatal error: could not build module 'Cling_Runtime_Extra'
#include "cling/Interpreter/Visibility.h"
~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
The full error message is kept here
Please let me know if you need more details from me.
Thank you very much,
Arka
_ROOT Version:6.32.04
_Platform: x86_64 (Apple Mac Intel)
_Compiler: AppleClang 16.0.0.16000026