Compilation problem with ACLIC library

rakoun · February 1, 2016, 9:05am

Hi I am a newbie in root, and first time to analyses data in root. So in compillation of the code I got this error, which I search in forum and couldnt find the exact match.

/home/ozge/SEASTAR/exp/users/offlineuser/./macros/MakeBigRIPSTree_C_ACLiC_dict.cxx: In function ‘int G__MakeBigRIPSTree_C_ACLiC_dict__0_3919(Gvalue, const char, Gparam, int)’:
/home/ozge/SEASTAR/exp/users/offlineuser/./macros/MakeBigRIPSTree_C_ACLiC_dict.cxx:95:52: warning: deprecated conversion from string constant to ‘char’ [-Wwrite-strings]
MakeBigRIPSTree((char*) G__int(libp->para[0]));
^
g++: error: /home/ozge/SEASTAR/exp/users/offlineuser/./macros/MakeBigRIPSTree_C_ACLiC_dict.o: No such file or directory
Error in : Compilation failed!

I understand that it couldnt find the ACLiC, but I dont know how to correct it. And I also post the code so maybe the problem is in the code
Thanks for advance
Özge
MakeBigRIPSTree.hh (7.45 KB)
MakeBigRIPSTree.C (8.05 KB)

bellenot · February 1, 2016, 9:32am

Hi,

Which version of ROOT? Which platform? Which compiler?
And we cannot try your code without the missing dependencies

EDIT: BTW, you can keep the intermediate files by setting gDebug=7

Cheers, Bertrand.

rakoun · February 1, 2016, 9:41am

Hi sorry to forget the write versions.
I use root version5.34.34 and I am in ubuntu 14.04 LTS, and gcc4.8
and for dependencies, should I attach all include .hh files like this ones ?
“TArtStoreManager.hh”
#include “TArtEventStore.hh”
#include “TArtBigRIPSParameters.hh”
#include "TArtDALIParameters.hh

edit I make
gDebug =7
.L MakeBigRipsTree.C+
and I got this answer

g++: error: /home/ozge/SEASTAR/exp/users/offlineuser/./macros/MakeBigRIPSTree_C_ACLiC_dict.o: No such file or directory
Error in : Compilation failed!
/home/ozge/SEASTAR/root/bin/rootcint --lib-list-prefix=/home/ozge/SEASTAR/exp/users/offlineuser/./macros/MakeBigRIPSTree_C_ACLiC_map -f /home/ozge/SEASTAR/exp/users/offlineuser/./macros/MakeBigRIPSTree_C_ACLiC_dict.cxx -c -p -I/home/ozge/SEASTAR/root/include -I/home/ozge/SEASTAR/exp/anaroot_15/include -I/home/ozge/SEASTAR/root/include -D__ACLIC__ /home/ozge/SEASTAR/exp/users/offlineuser/./macros/MakeBigRIPSTree.C /home/ozge/SEASTAR/exp/users/offlineuser/./macros/MakeBigRIPSTree_C_ACLiC_linkdef.h
cd /home/ozge/SEASTAR/exp/users/offlineuser/./macros ; g++ -c -O2 -pipe -m64 -W -Woverloaded-virtual -fPIC -pthread -I/home/ozge/SEASTAR/root/include -I/home/ozge/SEASTAR/exp/anaroot_15/include -I/home/ozge/SEASTAR/root/include -I/home/ozge/SEASTAR/exp/users/offlineuser/./macros -I/home/ozge/SEASTAR/exp/users/offlineuser -D__ACLIC__ /home/ozge/SEASTAR/exp/users/offlineuser/./macros/MakeBigRIPSTree_C_ACLiC_dict.cxx ; g++ /home/ozge/SEASTAR/exp/users/offlineuser/./macros/MakeBigRIPSTree_C_ACLiC_dict.o -shared -Wl,-soname,MakeBigRIPSTree_C.so -m64 -O2 -Wl,–no-undefined -Wl,–as-needed /home/ozge/SEASTAR/root/lib/libCint.so /home/ozge/SEASTAR/root/lib/libCore.so /home/ozge/SEASTAR/root/lib/libRint.so /home/ozge/SEASTAR/root/lib/libMathCore.so /home/ozge/SEASTAR/root/lib/libThread.so /home/ozge/SEASTAR/root/lib/libRIO.so /home/ozge/SEASTAR/root/lib/libXMLParser.so /home/ozge/SEASTAR/exp/anaroot_15/lib/libanaroot.so /home/ozge/SEASTAR/root/lib/libNet.so /home/ozge/SEASTAR/root/lib/libTree.so /home/ozge/SEASTAR/root/lib/libMatrix.so /home/ozge/SEASTAR/root/lib/libHist.so /home/ozge/SEASTAR/root/lib/libGraf.so /home/ozge/SEASTAR/root/lib/libGpad.so /home/ozge/SEASTAR/root/lib/libGraf3d.so /home/ozge/SEASTAR/root/lib/libTreePlayer.so /home/ozge/SEASTAR/root/lib/libPhysics.so -o /home/ozge/SEASTAR/exp/users/offlineuser/./macros/MakeBigRIPSTree_C.so
cd /home/ozge/SEASTAR/exp/users/offlineuser/./macros ; g++ -c -pipe -m64 -W -Woverloaded-virtual -fPIC -pthread -I/home/ozge/SEASTAR/root/include -I/home/ozge/SEASTAR/exp/anaroot_15/include -I/home/ozge/SEASTAR/root/include -I/home/ozge/SEASTAR/exp/users/offlineuser/./macros -I/home/ozge/SEASTAR/exp/users/offlineuser -D__ACLIC__ /home/ozge/SEASTAR/exp/users/offlineuser/./macros/MakeBigRIPSTree_C_ACLiC_dict.cxx; g++ /home/ozge/SEASTAR/exp/users/offlineuser/./macros/MakeBigRIPSTree_C_ACLiC_dict.o -m64 -O2 -Wl,–no-undefined -Wl,–as-needed -o /home/ozge/SEASTAR/exp/users/offlineuser/./macros/MakeBigRIPSTree_C_ACLiC_exec /home/ozge/SEASTAR/root/lib/libCint.so /home/ozge/SEASTAR/root/lib/libCore.so /home/ozge/SEASTAR/root/lib/libRint.so /home/ozge/SEASTAR/root/lib/libMathCore.so /home/ozge/SEASTAR/root/lib/libThread.so /home/ozge/SEASTAR/root/lib/libRIO.so /home/ozge/SEASTAR/root/lib/libXMLParser.so /home/ozge/SEASTAR/exp/anaroot_15/lib/libanaroot.so /home/ozge/SEASTAR/root/lib/libNet.so /home/ozge/SEASTAR/root/lib/libTree.so /home/ozge/SEASTAR/root/lib/libMatrix.so /home/ozge/SEASTAR/root/lib/libHist.so /home/ozge/SEASTAR/root/lib/libGraf.so /home/ozge/SEASTAR/root/lib/libGpad.so /home/ozge/SEASTAR/root/lib/libGraf3d.so /home/ozge/SEASTAR/root/lib/libTreePlayer.so /home/ozge/SEASTAR/root/lib/libPhysics.so -lm -ldl -pthread -rdynamic

Özge

Danilo · February 1, 2016, 10:08am

Hi,

the file TArtStoreManager.hh seems to be missing from your reproducer. Can you make your example stand alone?

Cheers,
Danilo

Pepe_Le_Pew · February 1, 2016, 10:13am

Try:
void MakeBigRIPSTree(const char *infile, const char *outfile=“bigrips.root”){

rakoun · February 1, 2016, 10:40am

first,
Hi Danilo , I dont understant what you say " Can you make your example stand alone?" what should i do to make it alone ?
second,
Hi Pepe le pew, I tried that one is not working still getting the same error.
Özge

Danilo · February 1, 2016, 10:49am

What we mean with “standalone” is a minimal example we could run to reproduce your problem: right now this is not the case as a file is missing.

rakoun · February 1, 2016, 11:36am

Hi I erase some lines just left the TArtStore ones. and remove other files
and I attach the very simple version in attachments
my code is :

#include
#include
#include
#include
#include “TArtStoreManager.hh”
#include “TSystem.h”
#include “TTree.h”
#include “TFile.h”
#include “TClonesArray.h”
#include “TVector3.h”
#include “signal.h”
using namespace std;
bool stoploop = false;
void stop_interrupt(){
printf(“keyboard interrupt\n”);
stoploop = true;
}
void Maketry( char *infile, char *outfile=“bigrips.root”){
TArtStoreManager * sman = TArtStoreManager::Instance();
cout<<“Writing the tree.”<<endl;
fout->Write();
fout->Close();
}
TArtRawEventObject.hh (1.9 KB)
TArtRawFADCDataObject.hh (1021 Bytes)
TArtRawFeminosDataObject.hh (1.8 KB)
TArtRawScalerObject.hh (1.11 KB)
TArtRawSegmentObject.hh (2.87 KB)

rakoun · February 1, 2016, 11:38am

the rest lib files are this ones. TArtStoreman… is main one others are connected to that one

and gives the same error I also add full replyof the error message as error_Maketry
/home/ozge/SEASTAR/exp/users/offlineuser/./macros/Maketry_C_ACLiC_dict.cxx: In function ‘int G__Maketry_C_ACLiC_dict__0_3225(G__value*, const char*, G__param*, int)’:
/home/ozge/SEASTAR/exp/users/offlineuser/./macros/Maketry_C_ACLiC_dict.cxx:95:44: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
Maketry((char*) G__int(libp->para[0]));
^
g++: error: /home/ozge/SEASTAR/exp/users/offlineuser/./macros/Maketry_C_ACLiC_dict.o: No such file or directory
Error in : Compilation failed!
error_Maketry.txt (14.7 KB)
TArtStoreManager.hh (850 Bytes)
TArtCore.hh (711 Bytes)
TArtRawDataObject.hh (1.59 KB)

Pepe_Le_Pew · February 1, 2016, 12:30pm

Looking at your “error_Maketry.txt” file:

there’s an error which says: ‘fout’ was not declared in this scope,
change “char *” into “const char *” in order to get fewer warnings.

rakoun · February 1, 2016, 1:11pm

Hi it gives that error because its my version of small code , Actually we try this macros the big one in the first msg it works in other computers, so probably i have same compilation error rather than codding. since error starts with g++ . is there any method to understand, incompatibility of g++ with root ? should i upgrade g++ or anything else ?

Pepe_Le_Pew · February 1, 2016, 1:21pm

From your “Maketry”, remove the lines “fout->Write();” and “fout->Close();” (apparently you nowhere define the “fout” variable) and then try again.

rakoun · February 1, 2016, 1:31pm

ok I did what u said (remove fout and change char* to const char*) and this is the part of error message :

/home/ozge/SEASTAR/exp/users/offlineuser/./macros/Maketry_C_ACLiC_dict.o: In function Maketry(char const*, char const*)': Maketry_C_ACLiC_dict.cxx:(.text+0x47): undefined reference toTArtStoreManager::Instance()’
/home/ozge/SEASTAR/exp/users/offlineuser/./macros/Maketry_C_ACLiC_dict.o: In function _GLOBAL__sub_I_Maketry_C_ACLiC_dict.cxx': Maketry_C_ACLiC_dict.cxx:(.text.startup+0x3e): undefined reference toROOTDict::GenerateInitInstance(TArtRawEventObject const*)'
collect2: error: ld returned 1 exit status
Error in : Compilation failed!

Pepe_Le_Pew · February 1, 2016, 2:10pm

You (first) need to load the library which provides all your classes (e.g. the “TArtStoreManager” implementation).

rakoun · February 1, 2016, 2:30pm

I made it with gSystyem->Load(“libraryname.hh”) but it didnt work.
thanks for your helping by the way
Özge

Pepe_Le_Pew · February 1, 2016, 2:40pm

You need to load a shared library with your classes, something like:
root [0] .L libraryname.so
or:
root [0] gSystem->Load(“libraryname.so”)

rakoun · February 1, 2016, 2:58pm

okey but I try the basic test code in the root file that I think everybody has the same ones, in root/test/dt_DrawTest.C and this also gives the same error like that

Info in TUnixSystem::ACLiC: creating shared library /home/ozge/SEASTAR/root/test/./dt_DrawTest_C.so
In file included from /home/ozge/SEASTAR/root/test/dt_DrawTest_C_ACLiC_dict.h:34:0,
from /home/ozge/SEASTAR/root/test/dt_DrawTest_C_ACLiC_dict.cxx:17:
/home/ozge/SEASTAR/root/test/./dt_DrawTest.C: In function ‘void DrawSkippable(TTree, const char, const char, Bool_t)’:
/home/ozge/SEASTAR/root/test/./dt_DrawTest.C:19:15: error: invalid use of incomplete type ‘class TH1’
if (h) h->SetTitle(Form(“histo made from T->Draw(”%s")",what));
^
In file included from /home/ozge/SEASTAR/root/include/TTree.h:66:0,
from /home/ozge/SEASTAR/root/test/./dt_DrawTest.C:1,
from /home/ozge/SEASTAR/root/test/dt_DrawTest_C_ACLiC_dict.h:34,
from /home/ozge/SEASTAR/root/test/dt_DrawTest_C_ACLiC_dict.cxx:17:
/home/ozge/SEASTAR/root/include/TVirtualTreePlayer.h:30:7: error: forward declaration of ‘class TH1’
class TH1;
^
In file included from /home/ozge/SEASTAR/root/test/dt_DrawTest_C_ACLiC_dict.h:34:0,
from /home/ozge/SEASTAR/root/test/dt_DrawTest_C_ACLiC_dict.cxx:17:
/home/ozge/SEASTAR/root/test/./dt_DrawTest.C: In function ‘void DrawSkippable(TTree, const char, const char, const char*, Bool_t)’:
/home/ozge/SEASTAR/root/test/./dt_DrawTest.C:34:15: error: invalid use of incomplete type ‘class TH1’
if (h) h->SetTitle(Form(“histo made from T->Draw(”%s","%s")",what,cond));
^
In file included from /home/ozge/SEASTAR/root/include/TTree.h:66:0,
from /home/ozge/SEASTAR/root/test/./dt_DrawTest.C:1,
from /home/ozge/SEASTAR/root/test/dt_DrawTest_C_ACLiC_dict.h:34,
from /home/ozge/SEASTAR/root/test/dt_DrawTest_C_ACLiC_dict.cxx:17:
/home/ozge/SEASTAR/root/include/TVirtualTreePlayer.h:30:7: error: forward declaration of ‘class TH1’
class TH1;
^
g++: error: /home/ozge/SEASTAR/root/test/dt_DrawTest_C_ACLiC_dict.o: No such file or directory
Error in : Compilation failed!

or more basic one dt_build.C

Info in TUnixSystem::ACLiC: creating shared library /home/ozge/SEASTAR/root/test/./dt_build_C.so
In file included from /home/ozge/SEASTAR/root/test/dt_build_C_ACLiC_dict.h:34:0,
from /home/ozge/SEASTAR/root/test/dt_build_C_ACLiC_dict.cxx:17:
/home/ozge/SEASTAR/root/test/./dt_build.C:1:1: error: expected unqualified-id before ‘{’ token
{
^
/home/ozge/SEASTAR/root/test/dt_build_C_ACLiC_dict.cxx: In function ‘int G__dt_build_C_ACLiC_dict__0_2180(G__value*, const char*, G__param*, int)’:
/home/ozge/SEASTAR/root/test/dt_build_C_ACLiC_dict.cxx:82:38: error: ‘gSystem’ was not declared in this scope
G__letint(result7, 105, (long) gSystem->Exit());
^
g++: error: /home/ozge/SEASTAR/root/test/dt_build_C_ACLiC_dict.o: No such file or directory
Error in : Compilation failed!

pcanal · February 1, 2016, 3:13pm

Hi,

dt_DrawTest.C has not been tested with ACliC, to get to work, you need to add#include "TH1.h"For testing ACLiC, I recommend you talk a look at the file in $ROOTSYS/tutorials and $ROOTSYS/tutorials/hsimple.C in particular.

Cheers,
Philippe.

rakoun · February 1, 2016, 4:24pm

okey I try hsimple.C , obviously ACliC is working and dr_Draft is also working.

.L hsimple.C+
Warning in : /home/hj/root/tutorials is not writable!
Warning in : Output will be written to /tmp/nucle
Info in TUnixSystem::ACLiC: creating shared library /tmp/nucle//home/hj/root/tutorials/./hsimple_C.so

but my problem is stable still, I try to reinstall root in other machine. Now I will try to load libraries again. t o update this is my last error msg

/home/nucle/SEASTAR/exp/users/clem/./macros/MakeBigRIPSTree_C_ACLiC_dict.o: In function MakeBigRIPSTree(int)': MakeBigRIPSTree_C_ACLiC_dict.cxx:(.text+0x2688): undefined reference toTArtStoreManager::Instance()'
MakeBigRIPSTree_C_ACLiC_dict.cxx:(.text+0x26a5): undefined reference to TArtEventStore::TArtEventStore()' MakeBigRIPSTree_C_ACLiC_dict.cxx:(.text+0x26de): undefined reference toTArtBigRIPSParameters::Instance(char const*, char const*)'
MakeBigRIPSTree_C_ACLiC_dict.cxx:(.text+0x26f0): undefined reference to TArtBigRIPSParameters::LoadParameter(char*)' MakeBigRIPSTree_C_ACLiC_dict.cxx:(.text+0x26ff): undefined reference toTArtBigRIPSParameters::LoadParameter(char*)'
MakeBigRIPSTree_C_ACLiC_dict.cxx:(.text+0x270e): undefined reference to TArtBigRIPSParameters::LoadParameter(char*)' MakeBigRIPSTree_C_ACLiC_dict.cxx:(.text+0x271d): undefined reference toTArtBigRIPSParameters::LoadParameter(char*)'
MakeBigRIPSTree_C_ACLiC_dict.cxx:(.text+0x2732): undefined reference to TArtBigRIPSParameters::SetFocusPosOffset(int, double)' MakeBigRIPSTree_C_ACLiC_dict.cxx:(.text+0x2747): undefined reference toTArtCalibPID::TArtCalibPID()'
MakeBigRIPSTree_C_ACLiC_dict.cxx:(.text+0x275c): undefined reference to TArtCalibPID::TArtCalibPID()' MakeBigRIPSTree_C_ACLiC_dict.cxx:(.text+0x2771): undefined reference toTArtRecoPID::TArtRecoPID()'
MakeBigRIPSTree_C_ACLiC_dict.cxx:(.text+0x2779): undefined reference to TArtBigRIPSParameters::PrintListOfPPACPara()' MakeBigRIPSTree_C_ACLiC_dict.cxx:(.text+0x27ee): undefined reference toTArtRecoPID::DefineNewRIPS(int, int, char*, char*)'
MakeBigRIPSTree_C_ACLiC_dict.cxx:(.text+0x2813): undefined reference to TArtRecoPID::DefineNewRIPS(int, int, char*, char*)' MakeBigRIPSTree_C_ACLiC_dict.cxx:(.text+0x2838): undefined reference toTArtRecoPID::DefineNewRIPS(int, int, char*, char*)'
MakeBigRIPSTree_C_ACLiC_dict.cxx:(.text+0x285d): undefined reference to TArtRecoPID::DefineNewRIPS(int, int, char*, char*)' MakeBigRIPSTree_C_ACLiC_dict.cxx:(.text+0x28d3): undefined reference toTArtRecoPID::DefineNewTOF(char*, char*, double, int)'
MakeBigRIPSTree_C_ACLiC_dict.cxx:(.text+0x28f9): undefined reference to TArtRecoPID::DefineNewTOF(char*, char*, double, int)' MakeBigRIPSTree_C_ACLiC_dict.cxx:(.text+0x2961): undefined reference toTArtRecoPID::DefineNewBeam(TArtRIPS*, TArtTOF*, char*)'
MakeBigRIPSTree_C_ACLiC_dict.cxx:(.text+0x2978): undefined reference to TArtRecoPID::DefineNewBeam(TArtRIPS*, TArtTOF*, char*)' MakeBigRIPSTree_C_ACLiC_dict.cxx:(.text+0x2994): undefined reference toTArtRecoPID::DefineNewBeam(TArtRIPS*, TArtRIPS*, TArtTOF*, char*)'
MakeBigRIPSTree_C_ACLiC_dict.cxx:(.text+0x29ab): undefined reference to TArtRecoPID::DefineNewBeam(TArtRIPS*, TArtTOF*, char*)' MakeBigRIPSTree_C_ACLiC_dict.cxx:(.text+0x29c5): undefined reference toTArtRecoPID::DefineNewBeam(TArtRIPS*, TArtTOF*, char*)‘
MakeBigRIPSTree_C_ACLiC_dict.cxx:(.text+0x29df): undefined reference to TArtRecoPID::DefineNewBeam(TArtRIPS*, TArtRIPS*, TArtTOF*, char*)' MakeBigRIPSTree_C_ACLiC_dict.cxx:(.text+0x2a1e): undefined reference tovtable for TArtEventInfo’
MakeBigRIPSTree_C_ACLiC_dict.cxx:(.text+0x30dd): undefined reference to TArtEventStore::GetNextEvent()' /home/nucle/SEASTAR/exp/users/clem/./macros/MakeBigRIPSTree_C_ACLiC_dict.o: In function_GLOBAL__sub_I_MakeBigRIPSTree_C_ACLiC_dict.cxx’:
MakeBigRIPSTree_C_ACLiC_dict.cxx:(.text.startup+0x3e): undefined reference to ROOT::GenerateInitInstance(TArtRawEventObject const*)' MakeBigRIPSTree_C_ACLiC_dict.cxx:(.text.startup+0x5f): undefined reference toROOT::GenerateInitInstance(TArtEventInfo const*)'
collect2: error: ld returned 1 exit status
Error in : Compilation failed!

pcanal · February 1, 2016, 4:34pm

Hi,

In which library did you request/build the dictionary for TArtStoreManager? In which library did you include the object file containing the implementation of TArtBigRIPSParameters::LoadParameter(char*)?

Philippe.