Build root app under eclipse

Is there anyone using eclipse to build root apps? I know i am lazy but have you figured out a way to make eclipse (semi-)automatically produce the make file for a project with many layers of dirs? some file naming convention may be used.

i am able to achieve semi-auto make file production for complex dir structure. but with some problems, such as i have to make clean every time i want to rebuild…

if any1 is instered i will post my way for discussion.

I am also interested to use run root app under eclipse.
But I really don’t know how to configure eclipse. do you successfully make it works?