#include "TROOT.h"
#include "TChain.h"
#include "TFile.h"
#include "TString.h"
#include "TH1D.h"
#include "TRandom3.h"
#include "TVectorD.h"

#include <iostream>
using std::cout;
using std::endl;

#include <map>
using std::map;

#include <utility>
using std::pair;
using std::make_pair;

#include <fstream>
using std::ifstream;
using std::ofstream;

#include <string>
using std::string;

void extractSpectra(TString inFileName, TString outFileName)
{
    const UShort_t chargeBoard   = 1;
    const UShort_t chargeChannel = 7;
    
    TChain inChain("Data_F");
    inChain.Add(inFileName + "*.root");

    UShort_t board, channel, energy;
    ULong_t timestamp;

    inChain.SetBranchStatus("*", 0);

    inChain.SetBranchStatus("Board", 1);
    inChain.SetBranchAddress("Board", &board);
    
    inChain.SetBranchStatus("Channel", 1);
    inChain.SetBranchAddress("Channel", &channel);
    
    inChain.SetBranchStatus("Energy", 1);
    inChain.SetBranchAddress("Energy", &energy);

    inChain.SetBranchStatus("Timestamp", 1);
    inChain.SetBranchAddress("Timestamp", &timestamp);
    
    map <UShort_t, map <UShort_t, TH1D> > histograms;
    
    map <UShort_t, map <UShort_t, ULong_t > > firstEventTimeStamp;
    map <UShort_t, map <UShort_t, ULong_t > > lastEventTimeStamp;

    TFile outFile(outFileName, "RECREATE");
    
    for (int iBoard = 0; iBoard < 2; iBoard++) {
        for (int iChannel = 0; iChannel < 8; iChannel++) {
            TString histoName = TString::Format("h%i-%i", iBoard, iChannel);
            histograms[iBoard][iChannel] = TH1D(histoName, histoName, 8192, 0, 8192);

            firstEventTimeStamp[iBoard][iChannel] = 0;
            lastEventTimeStamp[iBoard][iChannel] = 0;
        }
    }
    
    const size_t nEntries = inChain.GetEntries();
    
    cout << "Filling spectra." << endl;
    for (size_t iEntry = 0; iEntry < nEntries; iEntry++) {
        inChain.GetEntry(iEntry);
        histograms[board][channel].Fill(energy);
        
        if (firstEventTimeStamp[board][channel] == 0) {
            firstEventTimeStamp[board][channel] = timestamp;
        }
        lastEventTimeStamp[board][channel] = timestamp;
    }
    cout << endl;
 
    cout << "Writing spectra to file:" << endl; 
    outFile.cd();
    for (int iBoard = 0; iBoard < 2; iBoard++) {
        ULong_t lastTimeStampForThisBoard = 0;
        for (int iChannel = 0; iChannel < 8; iChannel++) {
            cout << "  * " << histograms[iBoard][iChannel].GetName() << ": " << histograms[iBoard][iChannel].GetEntries() << " entries" << endl;
            histograms[iBoard][iChannel].Write("", TObject::kOverwrite);

            if (lastTimeStampForThisBoard < lastEventTimeStamp[iBoard][iChannel]) {
                lastTimeStampForThisBoard = lastEventTimeStamp[iBoard][iChannel];
            }
        }
        TVectorD lastTimeStamp(1);
        lastTimeStamp[0] = 1e-12*lastTimeStampForThisBoard;
        lastTimeStamp.Write(TString::Format("lastTimeStampSeconds-%i", iBoard));
    }
    cout << endl;
}


int main()
{
	TString inFileName = "../rootfiles/run_324/UNFILTERED/compass_run_324.root";
	TString OutFileName = "spectra.root";
	cout<<extractSpectra(inFileName,OutFileName)<<endl;


return 0;
}