rabbitus@linux-2zjz:~/CRAN/Workspaces/testAB> R -d "valgrind --tool=memcheck --leak-check=full" --vanilla < mas5S11.R ==28238== Memcheck, a memory error detector. ==28238== Copyright (C) 2002-2007, and GNU GPL'd, by Julian Seward et al. ==28238== Using LibVEX rev 1854, a library for dynamic binary translation. ==28238== Copyright (C) 2004-2007, and GNU GPL'd, by OpenWorks LLP. ==28238== Using valgrind-3.3.1, a dynamic binary instrumentation framework. ==28238== Copyright (C) 2000-2007, and GNU GPL'd, by Julian Seward et al. ==28238== For more details, rerun with: -v ==28238== R version 2.9.0 (2009-04-17) Copyright (C) 2009 The R Foundation for Statistical Computing ISBN 3-900051-07-0 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(xps) ==28238== Invalid read of size 4 ==28238== at 0x4017790: (within /lib/ld-2.9.so) ==28238== by 0x42981C3: (within /lib/libc-2.9.so) ==28238== by 0x4298599: _dl_sym (in /lib/libc-2.9.so) ==28238== by 0x418BE27: (within /lib/libdl-2.9.so) ==28238== by 0x400E9F5: (within /lib/ld-2.9.so) ==28238== by 0x418C11B: (within /lib/libdl-2.9.so) ==28238== by 0x418BDB2: dlsym (in /lib/libdl-2.9.so) ==28238== by 0x8111614: AddDLL (Rdynload.c:557) ==28238== by 0x811182D: do_dynload (Rdynload.c:891) ==28238== by 0x806A2D2: do_internal (names.c:1148) ==28238== by 0x8197418: Rf_eval (eval.c:461) ==28238== by 0x819AE88: Rf_applyClosure (eval.c:667) ==28238== Address 0x608be10 is 8 bytes inside a block of size 11 alloc'd ==28238== at 0x4027DDE: malloc (in /usr/lib/valgrind/x86-linux/vgpreload_memcheck.so) ==28238== by 0x81115E4: AddDLL (Rdynload.c:549) ==28238== by 0x811182D: do_dynload (Rdynload.c:891) ==28238== by 0x806A2D2: do_internal (names.c:1148) ==28238== by 0x8197418: Rf_eval (eval.c:461) ==28238== by 0x819AE88: Rf_applyClosure (eval.c:667) ==28238== by 0x819736B: Rf_eval (eval.c:505) ==28238== by 0x8197418: Rf_eval (eval.c:461) ==28238== by 0x8199864: do_set (eval.c:1440) ==28238== by 0x8197418: Rf_eval (eval.c:461) ==28238== by 0x81998EE: do_begin (eval.c:1185) ==28238== by 0x8197418: Rf_eval (eval.c:461) Welcome to xps version 1.4.3 an R wrapper for XPS - eXpression Profiling System (c) Copyright 2001-2009 by Christian Stratowa > > outdir <- "/home/rabbitus/CRAN/Workspaces/testAB" > > scheme.test3 <- root.scheme("/home/rabbitus/CRAN/Workspaces/Schemes/Scheme_Test3_na27.root") > data.testAB <- root.data(scheme.test3, "/home/rabbitus/CRAN/Workspaces/testAB/TestAB_cel.root") > > data.mas5 <- mas5(data.testAB, "TestAB_mas5", filedir=outdir, tmpdir="", normalize=T, sc=500, verbose=T) Creating new file ... Opening file in mode... Opening file in mode... Preprocessing data using method ... Background correcting raw data... calculating background for ... background statistics: 1 cells with minimal intensity 608.592 1 cells with maximal intensity 654.4 ==28238== ==28238== Conditional jump or move depends on uninitialised value(s) ==28238== at 0x81D7610: longest_match (deflate.c:1129) ==28238== by 0x81D8E39: deflate_fast (deflate.c:1470) ==28238== by 0x81D7EA8: deflate (deflate.c:784) ==28238== by 0x67E802B: R__zip (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x7EBB3CE: TBasket::WriteBuffer() (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7EC3271: TBranch::WriteBasket(TBasket*, int) (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7EC3451: TBranch::FlushOneBasket(unsigned) (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7EC52BB: TBranch::FlushBaskets() (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7EC5317: TBranch::FlushBaskets() (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7EC5317: TBranch::FlushBaskets() (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7F0E2EB: TTree::FlushBaskets() const (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7F0C764: TTree::Write(char const*, int, int) const (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== ==28238== Conditional jump or move depends on uninitialised value(s) ==28238== at 0x81D7626: longest_match (deflate.c:1129) ==28238== by 0x81D8E39: deflate_fast (deflate.c:1470) ==28238== by 0x81D7EA8: deflate (deflate.c:784) ==28238== by 0x67E802B: R__zip (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x7EBB3CE: TBasket::WriteBuffer() (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7EC3271: TBranch::WriteBasket(TBasket*, int) (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7EC3451: TBranch::FlushOneBasket(unsigned) (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7EC52BB: TBranch::FlushBaskets() (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7EC5317: TBranch::FlushBaskets() (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7EC5317: TBranch::FlushBaskets() (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7F0E2EB: TTree::FlushBaskets() const (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7F0C764: TTree::Write(char const*, int, int) const (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== ==28238== Conditional jump or move depends on uninitialised value(s) ==28238== at 0x81D75F2: longest_match (deflate.c:1129) ==28238== by 0x81D8E39: deflate_fast (deflate.c:1470) ==28238== by 0x81D7EA8: deflate (deflate.c:784) ==28238== by 0x67E802B: R__zip (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x7EBB3CE: TBasket::WriteBuffer() (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7EC3271: TBranch::WriteBasket(TBasket*, int) (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7EC3451: TBranch::FlushOneBasket(unsigned) (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7EC52BB: TBranch::FlushBaskets() (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7EC5317: TBranch::FlushBaskets() (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7EC5317: TBranch::FlushBaskets() (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7F0E2EB: TTree::FlushBaskets() const (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7F0C764: TTree::Write(char const*, int, int) const (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== ==28238== Conditional jump or move depends on uninitialised value(s) ==28238== at 0x81D7601: longest_match (deflate.c:1129) ==28238== by 0x81D8E39: deflate_fast (deflate.c:1470) ==28238== by 0x81D7EA8: deflate (deflate.c:784) ==28238== by 0x67E802B: R__zip (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x7EBB3CE: TBasket::WriteBuffer() (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7EC3271: TBranch::WriteBasket(TBasket*, int) (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7EC3451: TBranch::FlushOneBasket(unsigned) (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7EC52BB: TBranch::FlushBaskets() (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7EC5317: TBranch::FlushBaskets() (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7EC5317: TBranch::FlushBaskets() (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7F0E2EB: TTree::FlushBaskets() const (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7F0C764: TTree::Write(char const*, int, int) const (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== ==28238== Conditional jump or move depends on uninitialised value(s) ==28238== at 0x81D755D: longest_match (deflate.c:1107) ==28238== by 0x81D8E39: deflate_fast (deflate.c:1470) ==28238== by 0x81D7EA8: deflate (deflate.c:784) ==28238== by 0x67E802B: R__zip (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x7EBB3CE: TBasket::WriteBuffer() (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7EC3271: TBranch::WriteBasket(TBasket*, int) (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7EC3451: TBranch::FlushOneBasket(unsigned) (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7EC52BB: TBranch::FlushBaskets() (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7EC5317: TBranch::FlushBaskets() (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7F0E2EB: TTree::FlushBaskets() const (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7F0C764: TTree::Write(char const*, int, int) const (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7F0C248: TTree::Write(char const*, int, int) (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== ==28238== Conditional jump or move depends on uninitialised value(s) ==28238== at 0x81D75B6: longest_match (deflate.c:1129) ==28238== by 0x81D8E39: deflate_fast (deflate.c:1470) ==28238== by 0x81D7EA8: deflate (deflate.c:784) ==28238== by 0x67E802B: R__zip (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x748A16E: TKey::TKey(TObject const*, char const*, int, TDirectory*) (in /home/rabbitus/ROOT/root/lib/libRIO.so) ==28238== by 0x747006B: TFile::CreateKey(TDirectory*, TObject const*, char const*, int) (in /home/rabbitus/ROOT/root/lib/libRIO.so) ==28238== by 0x7465B18: TDirectoryFile::WriteTObject(TObject const*, char const*, char const*, int) (in /home/rabbitus/ROOT/root/lib/libRIO.so) ==28238== by 0x671FC14: TObject::Write(char const*, int, int) const (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x7F0C781: TTree::Write(char const*, int, int) const (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7F0C248: TTree::Write(char const*, int, int) (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x6200E38: XTreeSet::WriteTree(TTree*, int, int) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x62A8371: XGCProcesSet::AdjustBackground(int, TTree**, int&, TTree**) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== ==28238== Conditional jump or move depends on uninitialised value(s) ==28238== at 0x81D75C5: longest_match (deflate.c:1129) ==28238== by 0x81D8E39: deflate_fast (deflate.c:1470) ==28238== by 0x81D7EA8: deflate (deflate.c:784) ==28238== by 0x67E802B: R__zip (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x748A16E: TKey::TKey(TObject const*, char const*, int, TDirectory*) (in /home/rabbitus/ROOT/root/lib/libRIO.so) ==28238== by 0x747006B: TFile::CreateKey(TDirectory*, TObject const*, char const*, int) (in /home/rabbitus/ROOT/root/lib/libRIO.so) ==28238== by 0x7465B18: TDirectoryFile::WriteTObject(TObject const*, char const*, char const*, int) (in /home/rabbitus/ROOT/root/lib/libRIO.so) ==28238== by 0x671FC14: TObject::Write(char const*, int, int) const (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x7F0C781: TTree::Write(char const*, int, int) const (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7F0C248: TTree::Write(char const*, int, int) (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x6200E38: XTreeSet::WriteTree(TTree*, int, int) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x62A8371: XGCProcesSet::AdjustBackground(int, TTree**, int&, TTree**) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== ==28238== Conditional jump or move depends on uninitialised value(s) ==28238== at 0x81D75D4: longest_match (deflate.c:1129) ==28238== by 0x81D8E39: deflate_fast (deflate.c:1470) ==28238== by 0x81D7EA8: deflate (deflate.c:784) ==28238== by 0x67E802B: R__zip (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x748A16E: TKey::TKey(TObject const*, char const*, int, TDirectory*) (in /home/rabbitus/ROOT/root/lib/libRIO.so) ==28238== by 0x747006B: TFile::CreateKey(TDirectory*, TObject const*, char const*, int) (in /home/rabbitus/ROOT/root/lib/libRIO.so) ==28238== by 0x7465B18: TDirectoryFile::WriteTObject(TObject const*, char const*, char const*, int) (in /home/rabbitus/ROOT/root/lib/libRIO.so) ==28238== by 0x671FC14: TObject::Write(char const*, int, int) const (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x7F0C781: TTree::Write(char const*, int, int) const (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7F0C248: TTree::Write(char const*, int, int) (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x6200E38: XTreeSet::WriteTree(TTree*, int, int) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x62A8371: XGCProcesSet::AdjustBackground(int, TTree**, int&, TTree**) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== ==28238== Conditional jump or move depends on uninitialised value(s) ==28238== at 0x81D75E3: longest_match (deflate.c:1129) ==28238== by 0x81D8E39: deflate_fast (deflate.c:1470) ==28238== by 0x81D7EA8: deflate (deflate.c:784) ==28238== by 0x67E802B: R__zip (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x748A16E: TKey::TKey(TObject const*, char const*, int, TDirectory*) (in /home/rabbitus/ROOT/root/lib/libRIO.so) ==28238== by 0x747006B: TFile::CreateKey(TDirectory*, TObject const*, char const*, int) (in /home/rabbitus/ROOT/root/lib/libRIO.so) ==28238== by 0x7465B18: TDirectoryFile::WriteTObject(TObject const*, char const*, char const*, int) (in /home/rabbitus/ROOT/root/lib/libRIO.so) ==28238== by 0x671FC14: TObject::Write(char const*, int, int) const (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x7F0C781: TTree::Write(char const*, int, int) const (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7F0C248: TTree::Write(char const*, int, int) (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x6200E38: XTreeSet::WriteTree(TTree*, int, int) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x62A8371: XGCProcesSet::AdjustBackground(int, TTree**, int&, TTree**) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) calculating background for ... background statistics: 1 cells with minimal intensity 611.733 1 cells with maximal intensity 649.594 calculating background for ... background statistics: 1 cells with minimal intensity 35.4501 1 cells with maximal intensity 51.5309 calculating background for ... background statistics: 1 cells with minimal intensity 32.1285 1 cells with maximal intensity 45.2544 ==28238== ==28238== Conditional jump or move depends on uninitialised value(s) ==28238== at 0x81D756B: longest_match (deflate.c:1107) ==28238== by 0x81D8E39: deflate_fast (deflate.c:1470) ==28238== by 0x81D7EA8: deflate (deflate.c:784) ==28238== by 0x67E802B: R__zip (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x748A16E: TKey::TKey(TObject const*, char const*, int, TDirectory*) (in /home/rabbitus/ROOT/root/lib/libRIO.so) ==28238== by 0x747006B: TFile::CreateKey(TDirectory*, TObject const*, char const*, int) (in /home/rabbitus/ROOT/root/lib/libRIO.so) ==28238== by 0x7465B18: TDirectoryFile::WriteTObject(TObject const*, char const*, char const*, int) (in /home/rabbitus/ROOT/root/lib/libRIO.so) ==28238== by 0x671FC14: TObject::Write(char const*, int, int) const (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x7F0C781: TTree::Write(char const*, int, int) const (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7F0C248: TTree::Write(char const*, int, int) (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x6200E38: XTreeSet::WriteTree(TTree*, int, int) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x62A07FC: XGCProcesSet::FillDataTree(TTree*, char const*, XAlgorithm*, int, int, double*, double*) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== ==28238== Conditional jump or move depends on uninitialised value(s) ==28238== at 0x81D75A1: longest_match (deflate.c:1107) ==28238== by 0x81D8E39: deflate_fast (deflate.c:1470) ==28238== by 0x81D7EA8: deflate (deflate.c:784) ==28238== by 0x67E802B: R__zip (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x748A16E: TKey::TKey(TObject const*, char const*, int, TDirectory*) (in /home/rabbitus/ROOT/root/lib/libRIO.so) ==28238== by 0x747006B: TFile::CreateKey(TDirectory*, TObject const*, char const*, int) (in /home/rabbitus/ROOT/root/lib/libRIO.so) ==28238== by 0x7465B18: TDirectoryFile::WriteTObject(TObject const*, char const*, char const*, int) (in /home/rabbitus/ROOT/root/lib/libRIO.so) ==28238== by 0x671FC14: TObject::Write(char const*, int, int) const (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x7F0C781: TTree::Write(char const*, int, int) const (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7F0C248: TTree::Write(char const*, int, int) (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x6200E38: XTreeSet::WriteTree(TTree*, int, int) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x62A07FC: XGCProcesSet::FillDataTree(TTree*, char const*, XAlgorithm*, int, int, double*, double*) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) Converting raw data to expression levels... summarizing with ... summarizing ... <345> of <358> calls processed...Finished expression statistics: minimal expression level is <1.82762>. maximal expression level is <21836.4>. summarizing ... <345> of <358> calls processed...Finished expression statistics: minimal expression level is <1.83151>. maximal expression level is <21840.7>. summarizing ... <345> of <358> calls processed...Finished expression statistics: minimal expression level is <3.56036>. maximal expression level is <12841.9>. summarizing ... <345> of <358> calls processed...Finished expression statistics: minimal expression level is <2.48623>. maximal expression level is <10160.6>. preprocessing finished. Opening file in mode... Opening file in mode... Exporting data from tree <*> to file ... Reading entries from ...Finished <345> of <345> records exported. Opening file in mode... Creating new file ... Opening file in mode... Normalizing expression data... normalizing ... normalization : Scaling factor SF is <0.73005> Tree name is removed from header. normalizing ... normalization : Scaling factor SF is <0.732536> normalizing ... normalization : Scaling factor SF is <1.27233> normalizing ... normalization : Scaling factor SF is <1.36269> normalization finished. ==28238== ==28238== Invalid read of size 4 ==28238== at 0x678D47A: TList::Clear(char const*) (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x678E0C9: TList::~TList() (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x620043F: XTreeSet::~XTreeSet() (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x627B094: XProcesSet::~XProcesSet() (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x62AF80B: XNormedSet::~XNormedSet() (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x62AF84C: XNormedGCSet::~XNormedGCSet() (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x6791D46: TObjectTable::Delete(char const*) (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x67875AC: TCollection::EmptyGarbageCollection() (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x6715FA0: TFolder::~TFolder() (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x61FBF8A: XFolder::~XFolder() (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x6202C35: XManager::Close(char const*) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x627C9D0: XProcessManager::Close(char const*) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== Address 0xa0902e0 is 8 bytes inside a block of size 372 free'd ==28238== at 0x402679A: operator delete(void*) (in /usr/lib/valgrind/x86-linux/vgpreload_memcheck.so) ==28238== by 0x6740E72: TStorage::ObjectDealloc(void*) (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x671E887: TObject::operator delete(void*) (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x7F186CB: TTree::~TTree() (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x678742C: TCollection::GarbageCollect(TObject*) (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x678D36D: TList::Delete(char const*) (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x627AFBA: XProcesSet::~XProcesSet() (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x62AF80B: XNormedSet::~XNormedSet() (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x62AF84C: XNormedGCSet::~XNormedGCSet() (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x6791D46: TObjectTable::Delete(char const*) (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x67875AC: TCollection::EmptyGarbageCollection() (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x6715FA0: TFolder::~TFolder() (in /home/rabbitus/ROOT/root/lib/libCore.so) Opening file in mode... Opening file in mode... Exporting data from tree <*> to file ... Reading entries from ...Finished <345> of <345> records exported. > ==28238== ==28238== ERROR SUMMARY: 244 errors from 13 contexts (suppressed: 203 from 2) ==28238== malloc/free: in use at exit: 19,969,104 bytes in 78,000 blocks. ==28238== malloc/free: 773,801 allocs, 695,801 frees, 139,814,029 bytes allocated. ==28238== For counts of detected errors, rerun with: -v ==28238== searching for pointers to 78,000 not-freed blocks. ==28238== checked 23,528,652 bytes. ==28238== ==28238== ==28238== 2 bytes in 1 blocks are definitely lost in loss record 3 of 203 ==28238== at 0x402710E: operator new[](unsigned) (in /usr/lib/valgrind/x86-linux/vgpreload_memcheck.so) ==28238== by 0x62D86C3: PreprocessMAS5 (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x817569B: do_dotCode (dotcode.c:1776) ==28238== by 0x8197682: Rf_eval (eval.c:487) ==28238== by 0x8198C0E: Rf_DispatchOrEval (eval.c:1902) ==28238== by 0x80E64BD: do_subset3 (subset.c:1006) ==28238== by 0x8197418: Rf_eval (eval.c:461) ==28238== by 0x8199864: do_set (eval.c:1440) ==28238== by 0x8197418: Rf_eval (eval.c:461) ==28238== by 0x81998EE: do_begin (eval.c:1185) ==28238== by 0x8197418: Rf_eval (eval.c:461) ==28238== by 0x819AE88: Rf_applyClosure (eval.c:667) ==28238== ==28238== ==28238== 4 bytes in 1 blocks are definitely lost in loss record 4 of 203 ==28238== at 0x4027DDE: malloc (in /usr/lib/valgrind/x86-linux/vgpreload_memcheck.so) ==28238== by 0x6E14D9D: G__memfunc_para_setup (in /home/rabbitus/ROOT/root/lib/libCint.so) ==28238== by 0x6E151A0: G__parse_parameter_link (in /home/rabbitus/ROOT/root/lib/libCint.so) ==28238== by 0x6E155B4: G__memfunc_setup_imp (in /home/rabbitus/ROOT/root/lib/libCint.so) ==28238== by 0x6E15EF7: G__memfunc_setup (in /home/rabbitus/ROOT/root/lib/libCint.so) ==28238== by 0x92E7836: _ZL18G__cpp_setup_func2v (in /home/rabbitus/ROOT/root/lib/libGui.so) ==28238== by 0x92E798F: G__cpp_setup_funcG__Gui1 (in /home/rabbitus/ROOT/root/lib/libGui.so) ==28238== by 0x93E1B87: G__cpp_setupG__Gui1 (in /home/rabbitus/ROOT/root/lib/libGui.so) ==28238== by 0x6DEE010: G__call_setup_funcs (in /home/rabbitus/ROOT/root/lib/libCint.so) ==28238== by 0x6DEE211: G__main (in /home/rabbitus/ROOT/root/lib/libCint.so) ==28238== by 0x6DF046F: G__init_cint (in /home/rabbitus/ROOT/root/lib/libCint.so) ==28238== by 0x67CCAA6: TCint::ResetAll() (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== ==28238== ==28238== 12 bytes in 2 blocks are definitely lost in loss record 58 of 203 ==28238== at 0x402710E: operator new[](unsigned) (in /usr/lib/valgrind/x86-linux/vgpreload_memcheck.so) ==28238== by 0x62D086A: ChipNameType (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x8171D6E: do_dotCode (dotcode.c:1729) ==28238== by 0x8197682: Rf_eval (eval.c:487) ==28238== by 0x8198C0E: Rf_DispatchOrEval (eval.c:1902) ==28238== by 0x80E64BD: do_subset3 (subset.c:1006) ==28238== by 0x8197418: Rf_eval (eval.c:461) ==28238== by 0x8199864: do_set (eval.c:1440) ==28238== by 0x8197418: Rf_eval (eval.c:461) ==28238== by 0x81998EE: do_begin (eval.c:1185) ==28238== by 0x8197418: Rf_eval (eval.c:461) ==28238== by 0x819AE88: Rf_applyClosure (eval.c:667) ==28238== ==28238== ==28238== 14 bytes in 1 blocks are definitely lost in loss record 59 of 203 ==28238== at 0x402710E: operator new[](unsigned) (in /usr/lib/valgrind/x86-linux/vgpreload_memcheck.so) ==28238== by 0x62D1D90: Normxpress (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x817219A: do_dotCode (dotcode.c:1810) ==28238== by 0x8197682: Rf_eval (eval.c:487) ==28238== by 0x8198C0E: Rf_DispatchOrEval (eval.c:1902) ==28238== by 0x80E64BD: do_subset3 (subset.c:1006) ==28238== by 0x8197418: Rf_eval (eval.c:461) ==28238== by 0x8199864: do_set (eval.c:1440) ==28238== by 0x8197418: Rf_eval (eval.c:461) ==28238== by 0x81998EE: do_begin (eval.c:1185) ==28238== by 0x8197418: Rf_eval (eval.c:461) ==28238== by 0x819AE88: Rf_applyClosure (eval.c:667) ==28238== ==28238== ==28238== 18 bytes in 2 blocks are definitely lost in loss record 61 of 203 ==28238== at 0x402710E: operator new[](unsigned) (in /usr/lib/valgrind/x86-linux/vgpreload_memcheck.so) ==28238== by 0x62D08A3: ChipNameType (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x8171D6E: do_dotCode (dotcode.c:1729) ==28238== by 0x8197682: Rf_eval (eval.c:487) ==28238== by 0x8198C0E: Rf_DispatchOrEval (eval.c:1902) ==28238== by 0x80E64BD: do_subset3 (subset.c:1006) ==28238== by 0x8197418: Rf_eval (eval.c:461) ==28238== by 0x8199864: do_set (eval.c:1440) ==28238== by 0x8197418: Rf_eval (eval.c:461) ==28238== by 0x81998EE: do_begin (eval.c:1185) ==28238== by 0x8197418: Rf_eval (eval.c:461) ==28238== by 0x819AE88: Rf_applyClosure (eval.c:667) ==28238== ==28238== ==28238== 112 bytes in 4 blocks are definitely lost in loss record 83 of 203 ==28238== at 0x40277EE: operator new(unsigned) (in /usr/lib/valgrind/x86-linux/vgpreload_memcheck.so) ==28238== by 0x6302883: _ZN4ROOTL11new_XBgCellEPv (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x679CDBA: TClass::New(TClass::ENewType) const (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x7ECD7A1: TBranchElement::SetAddress(void*) (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7F141D0: TTree::SetBranchAddress(char const*, void*, TBranch**) (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7F0BDBC: TTree::SetBranchAddress(char const*, void*, TBranch**, TClass*, EDataType, bool) (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x62A1038: XGCProcesSet::FillDataArrays(TTree*, TTree*, bool, int, int, double*, double*, int*, double*, double*) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x62ABADF: XGCProcesSet::DoExpress(int, TTree**, int, TTree**) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x62A5664: XGCProcesSet::Express(int, TTree**, int&, TTree**) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x62A9680: XGCProcesSet::Preprocess(char const*) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x629870E: XPreProcessManager::Preprocess(char const*, char const*) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x62D85F1: PreprocessMAS5 (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== ==28238== ==28238== 130 (56 direct, 74 indirect) bytes in 2 blocks are definitely lost in loss record 84 of 203 ==28238== at 0x40277EE: operator new(unsigned) (in /usr/lib/valgrind/x86-linux/vgpreload_memcheck.so) ==28238== by 0x64FBED3: _ZN4ROOTL11new_XGCUnitEPv (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x679CDBA: TClass::New(TClass::ENewType) const (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x7ECD7A1: TBranchElement::SetAddress(void*) (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7F141D0: TTree::SetBranchAddress(char const*, void*, TBranch**) (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7F0BDBC: TTree::SetBranchAddress(char const*, void*, TBranch**, TClass*, EDataType, bool) (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x627A0FD: void TTree::SetBranchAddress(char const*, XGCUnit**, TBranch**) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x62B26D4: XNormedGCSet::ExportExprTrees(int, TString*, char const*, std::basic_ofstream >&, char const*) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x62AF62D: XNormedSet::ExportTreeType(char const*, int, TString*, char const*, std::basic_ofstream >&, char const*) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x61F9055: XTreeSet::ExportTree(char const*, int, TString*, char const*, std::basic_ofstream >&, char const*) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x6202A60: XTreeSet::ExportTrees(char const*, char const*, std::basic_ofstream >&, char const*) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x6204208: XManager::Export(char const*, char const*, char const*, char const*) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== ==28238== ==28238== 67 (28 direct, 39 indirect) bytes in 1 blocks are definitely lost in loss record 85 of 203 ==28238== at 0x4027DDE: malloc (in /usr/lib/valgrind/x86-linux/vgpreload_memcheck.so) ==28238== by 0x6E1557E: G__memfunc_setup_imp (in /home/rabbitus/ROOT/root/lib/libCint.so) ==28238== by 0x6E15EF7: G__memfunc_setup (in /home/rabbitus/ROOT/root/lib/libCint.so) ==28238== by 0x92E7836: _ZL18G__cpp_setup_func2v (in /home/rabbitus/ROOT/root/lib/libGui.so) ==28238== by 0x92E798F: G__cpp_setup_funcG__Gui1 (in /home/rabbitus/ROOT/root/lib/libGui.so) ==28238== by 0x93E1B87: G__cpp_setupG__Gui1 (in /home/rabbitus/ROOT/root/lib/libGui.so) ==28238== by 0x6DEE010: G__call_setup_funcs (in /home/rabbitus/ROOT/root/lib/libCint.so) ==28238== by 0x9405F8E: G__cpp_setup_initG__Gui1::G__cpp_setup_initG__Gui1() (in /home/rabbitus/ROOT/root/lib/libGui.so) ==28238== by 0x93F9300: __static_initialization_and_destruction_0(int, int) (in /home/rabbitus/ROOT/root/lib/libGui.so) ==28238== by 0x93F9344: _GLOBAL__I_G(int __restrict, ., char, long long, long long) (in /home/rabbitus/ROOT/root/lib/libGui.so) ==28238== by 0x962ED0C: (within /home/rabbitus/ROOT/root/lib/libGui.so) ==28238== by 0x918219F: (within /home/rabbitus/ROOT/root/lib/libGui.so) ==28238== ==28238== ==28238== 32 bytes in 1 blocks are definitely lost in loss record 86 of 203 ==28238== at 0x40277EE: operator new(unsigned) (in /usr/lib/valgrind/x86-linux/vgpreload_memcheck.so) ==28238== by 0x62DEE1B: _ZN4ROOTL13new_XGCSchemeEPv (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x679CDBA: TClass::New(TClass::ENewType) const (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x7ECD7A1: TBranchElement::SetAddress(void*) (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7F141D0: TTree::SetBranchAddress(char const*, void*, TBranch**) (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7F0BDBC: TTree::SetBranchAddress(char const*, void*, TBranch**, TClass*, EDataType, bool) (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x6297086: XGCProcesSet::SchemeMask(XDNAChip*, int, int, int*) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x62A7B7A: XGCProcesSet::AdjustBackground(int, TTree**, int&, TTree**) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x62A9296: XGCProcesSet::Preprocess(char const*) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x629870E: XPreProcessManager::Preprocess(char const*, char const*) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x62D85F1: PreprocessMAS5 (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x817569B: do_dotCode (dotcode.c:1776) ==28238== ==28238== ==28238== 33 bytes in 1 blocks are possibly lost in loss record 87 of 203 ==28238== at 0x402710E: operator new[](unsigned) (in /usr/lib/valgrind/x86-linux/vgpreload_memcheck.so) ==28238== by 0x67DE40D: TUnixSystem::Setenv(char const*, char const*) (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x67DE1FA: _ZL10SetRootSysv (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x67DF3C7: TUnixSystem::Init() (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x6738E4A: TROOT::InitSystem() (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x673CBFD: TROOT::TROOT(char const*, char const*, void (**)()) (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x673E31D: ROOT::GetROOT() (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x6767121: TTimer::Reset() (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x6767350: TTimer::TTimer(long, bool) (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x6767A43: _GLOBAL__I_TTimer.cxx (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x6B6871C: (within /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x66D2C87: (within /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== ==28238== ==28238== 46 bytes in 1 blocks are definitely lost in loss record 89 of 203 ==28238== at 0x4027DDE: malloc (in /usr/lib/valgrind/x86-linux/vgpreload_memcheck.so) ==28238== by 0x6DF2ADC: G__register_sharedlib (in /home/rabbitus/ROOT/root/lib/libCint.so) ==28238== by 0x6E82C06: G__RegisterLibrary (in /home/rabbitus/ROOT/root/lib/libCint.so) ==28238== by 0x6DF06F3: G__add_setup_func (in /home/rabbitus/ROOT/root/lib/libCint.so) ==28238== by 0x9B5224F: G__cpp_setup_initG__TreeViewer::G__cpp_setup_initG__TreeViewer() (in /home/rabbitus/ROOT/root/lib/libTreeViewer.so) ==28238== by 0x9B504DC: __static_initialization_and_destruction_0(int, int) (in /home/rabbitus/ROOT/root/lib/libTreeViewer.so) ==28238== by 0x9B50520: _GLOBAL__I_G__TreeViewer.cxx (in /home/rabbitus/ROOT/root/lib/libTreeViewer.so) ==28238== by 0x9B5460C: (within /home/rabbitus/ROOT/root/lib/libTreeViewer.so) ==28238== by 0x9ACD3AF: (within /home/rabbitus/ROOT/root/lib/libTreeViewer.so) ==28238== by 0x400EDB3: (within /lib/ld-2.9.so) ==28238== by 0x400EEE3: (within /lib/ld-2.9.so) ==28238== by 0x4012EBA: (within /lib/ld-2.9.so) ==28238== ==28238== ==28238== 59 bytes in 1 blocks are definitely lost in loss record 91 of 203 ==28238== at 0x402710E: operator new[](unsigned) (in /usr/lib/valgrind/x86-linux/vgpreload_memcheck.so) ==28238== by 0x62D8625: PreprocessMAS5 (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x817569B: do_dotCode (dotcode.c:1776) ==28238== by 0x8197682: Rf_eval (eval.c:487) ==28238== by 0x8198C0E: Rf_DispatchOrEval (eval.c:1902) ==28238== by 0x80E64BD: do_subset3 (subset.c:1006) ==28238== by 0x8197418: Rf_eval (eval.c:461) ==28238== by 0x8199864: do_set (eval.c:1440) ==28238== by 0x8197418: Rf_eval (eval.c:461) ==28238== by 0x81998EE: do_begin (eval.c:1185) ==28238== by 0x8197418: Rf_eval (eval.c:461) ==28238== by 0x819AE88: Rf_applyClosure (eval.c:667) ==28238== ==28238== ==28238== 61 (60 direct, 1 indirect) bytes in 1 blocks are definitely lost in loss record 92 of 203 ==28238== at 0x4027DDE: malloc (in /usr/lib/valgrind/x86-linux/vgpreload_memcheck.so) ==28238== by 0x6DF2A87: G__register_sharedlib (in /home/rabbitus/ROOT/root/lib/libCint.so) ==28238== by 0x6E82C06: G__RegisterLibrary (in /home/rabbitus/ROOT/root/lib/libCint.so) ==28238== by 0x6DF06F3: G__add_setup_func (in /home/rabbitus/ROOT/root/lib/libCint.so) ==28238== by 0x9B5224F: G__cpp_setup_initG__TreeViewer::G__cpp_setup_initG__TreeViewer() (in /home/rabbitus/ROOT/root/lib/libTreeViewer.so) ==28238== by 0x9B504DC: __static_initialization_and_destruction_0(int, int) (in /home/rabbitus/ROOT/root/lib/libTreeViewer.so) ==28238== by 0x9B50520: _GLOBAL__I_G__TreeViewer.cxx (in /home/rabbitus/ROOT/root/lib/libTreeViewer.so) ==28238== by 0x9B5460C: (within /home/rabbitus/ROOT/root/lib/libTreeViewer.so) ==28238== by 0x9ACD3AF: (within /home/rabbitus/ROOT/root/lib/libTreeViewer.so) ==28238== by 0x400EDB3: (within /lib/ld-2.9.so) ==28238== by 0x400EEE3: (within /lib/ld-2.9.so) ==28238== by 0x4012EBA: (within /lib/ld-2.9.so) ==28238== ==28238== ==28238== 64 bytes in 4 blocks are definitely lost in loss record 93 of 203 ==28238== at 0x40277EE: operator new(unsigned) (in /usr/lib/valgrind/x86-linux/vgpreload_memcheck.so) ==28238== by 0x62DEFFB: _ZN4ROOTL15new_XExpressionEPv (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x679CDBA: TClass::New(TClass::ENewType) const (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x7ECD7A1: TBranchElement::SetAddress(void*) (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7F141D0: TTree::SetBranchAddress(char const*, void*, TBranch**) (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7F0BDBC: TTree::SetBranchAddress(char const*, void*, TBranch**, TClass*, EDataType, bool) (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x62B1E9F: XNormedGCSet::ExportExprTrees(int, TString*, char const*, std::basic_ofstream >&, char const*) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x62AF62D: XNormedSet::ExportTreeType(char const*, int, TString*, char const*, std::basic_ofstream >&, char const*) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x61F9055: XTreeSet::ExportTree(char const*, int, TString*, char const*, std::basic_ofstream >&, char const*) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x6202A60: XTreeSet::ExportTrees(char const*, char const*, std::basic_ofstream >&, char const*) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x6204208: XManager::Export(char const*, char const*, char const*, char const*) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x62CF13C: ExportData (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== ==28238== ==28238== 112 bytes in 4 blocks are definitely lost in loss record 98 of 203 ==28238== at 0x40277EE: operator new(unsigned) (in /usr/lib/valgrind/x86-linux/vgpreload_memcheck.so) ==28238== by 0x62A7F1E: XGCProcesSet::AdjustBackground(int, TTree**, int&, TTree**) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x62A9296: XGCProcesSet::Preprocess(char const*) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x629870E: XPreProcessManager::Preprocess(char const*, char const*) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x62D85F1: PreprocessMAS5 (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x817569B: do_dotCode (dotcode.c:1776) ==28238== by 0x8197682: Rf_eval (eval.c:487) ==28238== by 0x8198C0E: Rf_DispatchOrEval (eval.c:1902) ==28238== by 0x80E64BD: do_subset3 (subset.c:1006) ==28238== by 0x8197418: Rf_eval (eval.c:461) ==28238== by 0x8199864: do_set (eval.c:1440) ==28238== by 0x8197418: Rf_eval (eval.c:461) ==28238== ==28238== ==28238== 112 bytes in 4 blocks are definitely lost in loss record 99 of 203 ==28238== at 0x40277EE: operator new(unsigned) (in /usr/lib/valgrind/x86-linux/vgpreload_memcheck.so) ==28238== by 0x62ABBFD: XGCProcesSet::DoExpress(int, TTree**, int, TTree**) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x62A5664: XGCProcesSet::Express(int, TTree**, int&, TTree**) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x62A9680: XGCProcesSet::Preprocess(char const*) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x629870E: XPreProcessManager::Preprocess(char const*, char const*) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x62D85F1: PreprocessMAS5 (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x817569B: do_dotCode (dotcode.c:1776) ==28238== by 0x8197682: Rf_eval (eval.c:487) ==28238== by 0x8198C0E: Rf_DispatchOrEval (eval.c:1902) ==28238== by 0x80E64BD: do_subset3 (subset.c:1006) ==28238== by 0x8197418: Rf_eval (eval.c:461) ==28238== by 0x8199864: do_set (eval.c:1440) ==28238== ==28238== ==28238== 128 bytes in 4 blocks are definitely lost in loss record 100 of 203 ==28238== at 0x40277EE: operator new(unsigned) (in /usr/lib/valgrind/x86-linux/vgpreload_memcheck.so) ==28238== by 0x62A058C: XGCProcesSet::FillDataTree(TTree*, char const*, XAlgorithm*, int, int, double*, double*) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x62A840F: XGCProcesSet::AdjustBackground(int, TTree**, int&, TTree**) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x62A9296: XGCProcesSet::Preprocess(char const*) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x629870E: XPreProcessManager::Preprocess(char const*, char const*) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x62D85F1: PreprocessMAS5 (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x817569B: do_dotCode (dotcode.c:1776) ==28238== by 0x8197682: Rf_eval (eval.c:487) ==28238== by 0x8198C0E: Rf_DispatchOrEval (eval.c:1902) ==28238== by 0x80E64BD: do_subset3 (subset.c:1006) ==28238== by 0x8197418: Rf_eval (eval.c:461) ==28238== by 0x8199864: do_set (eval.c:1440) ==28238== ==28238== ==28238== 252 bytes in 9 blocks are definitely lost in loss record 106 of 203 ==28238== at 0x40277EE: operator new(unsigned) (in /usr/lib/valgrind/x86-linux/vgpreload_memcheck.so) ==28238== by 0x62DF04B: _ZN4ROOTL17new_XGCExpressionEPv (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x679CDBA: TClass::New(TClass::ENewType) const (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x7ECD7A1: TBranchElement::SetAddress(void*) (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x62AE859: XNormedSet::FillExprArray(TTree*, int, int*, double*) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x62B46EB: XNormedGCSet::Normalize(char const*) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x62B0177: XNormationManager::Normalize(char const*, char const*) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x62D2026: Normxpress (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x817219A: do_dotCode (dotcode.c:1810) ==28238== by 0x8197682: Rf_eval (eval.c:487) ==28238== by 0x8198C0E: Rf_DispatchOrEval (eval.c:1902) ==28238== by 0x80E64BD: do_subset3 (subset.c:1006) ==28238== ==28238== ==28238== 384 bytes in 12 blocks are definitely lost in loss record 110 of 203 ==28238== at 0x40277EE: operator new(unsigned) (in /usr/lib/valgrind/x86-linux/vgpreload_memcheck.so) ==28238== by 0x63026F3: _ZN4ROOTL11new_XGCCellEPv (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x679CDBA: TClass::New(TClass::ENewType) const (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x7ECD7A1: TBranchElement::SetAddress(void*) (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7F141D0: TTree::SetBranchAddress(char const*, void*, TBranch**) (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7F0BDBC: TTree::SetBranchAddress(char const*, void*, TBranch**, TClass*, EDataType, bool) (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x627A06D: void TTree::SetBranchAddress(char const*, XGCCell**, TBranch**) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x62A7E17: XGCProcesSet::AdjustBackground(int, TTree**, int&, TTree**) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x62A9296: XGCProcesSet::Preprocess(char const*) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x629870E: XPreProcessManager::Preprocess(char const*, char const*) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x62D85F1: PreprocessMAS5 (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x817569B: do_dotCode (dotcode.c:1776) ==28238== ==28238== ==28238== 408 (144 direct, 264 indirect) bytes in 2 blocks are definitely lost in loss record 111 of 203 ==28238== at 0x40277EE: operator new(unsigned) (in /usr/lib/valgrind/x86-linux/vgpreload_memcheck.so) ==28238== by 0x650D42B: _ZN4ROOTL20new_XTransAnnotationEPv (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x679CDBA: TClass::New(TClass::ENewType) const (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x7ECD7A1: TBranchElement::SetAddress(void*) (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7F141D0: TTree::SetBranchAddress(char const*, void*, TBranch**) (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x7F0BDBC: TTree::SetBranchAddress(char const*, void*, TBranch**, TClass*, EDataType, bool) (in /home/rabbitus/ROOT/root/lib/libTree.so) ==28238== by 0x62B2781: XNormedGCSet::ExportExprTrees(int, TString*, char const*, std::basic_ofstream >&, char const*) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x62AF62D: XNormedSet::ExportTreeType(char const*, int, TString*, char const*, std::basic_ofstream >&, char const*) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x61F9055: XTreeSet::ExportTree(char const*, int, TString*, char const*, std::basic_ofstream >&, char const*) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x6202A60: XTreeSet::ExportTrees(char const*, char const*, std::basic_ofstream >&, char const*) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x6204208: XManager::Export(char const*, char const*, char const*, char const*) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x62CF13C: ExportData (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== ==28238== ==28238== 440 bytes in 2 blocks are possibly lost in loss record 118 of 203 ==28238== at 0x40277EE: operator new(unsigned) (in /usr/lib/valgrind/x86-linux/vgpreload_memcheck.so) ==28238== by 0x674092A: TStorage::ObjectAlloc(unsigned) (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x67DABC4: TObject::operator new(unsigned) (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x68E5AAC: ROOT::TQObjectInitBehavior::CreateClass(char const*, short, std::type_info const&, TVirtualIsAProxy*, void (*)(void*, TMemberInspector&, char*), char const*, char const*, int, int) const (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x67B17B2: ROOT::TGenericClassInfo::GetClass() (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x69A0CF7: TQObject::Class() (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x67352B6: TQObject::IsA() const (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x673403C: TQObject::Emit(char const*) (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x6734303: TQObject::~TQObject() (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x6767E61: TSingleShotCleaner::~TSingleShotCleaner() (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x41BD9B0: exit (in /lib/libc-2.9.so) ==28238== by 0x8105D1C: Rstd_CleanUp (sys-std.c:1081) ==28238== ==28238== ==28238== 692 (180 direct, 512 indirect) bytes in 5 blocks are definitely lost in loss record 123 of 203 ==28238== at 0x402710E: operator new[](unsigned) (in /usr/lib/valgrind/x86-linux/vgpreload_memcheck.so) ==28238== by 0x62D01FC: GetTreeNames4Exten (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x8171DBD: do_dotCode (dotcode.c:1735) ==28238== by 0x8197682: Rf_eval (eval.c:487) ==28238== by 0x8198C0E: Rf_DispatchOrEval (eval.c:1902) ==28238== by 0x80E64BD: do_subset3 (subset.c:1006) ==28238== by 0x8197418: Rf_eval (eval.c:461) ==28238== by 0x8199864: do_set (eval.c:1440) ==28238== by 0x8197418: Rf_eval (eval.c:461) ==28238== by 0x81998EE: do_begin (eval.c:1185) ==28238== by 0x8197418: Rf_eval (eval.c:461) ==28238== by 0x8197418: Rf_eval (eval.c:461) ==28238== ==28238== ==28238== 200 bytes in 1 blocks are definitely lost in loss record 125 of 203 ==28238== at 0x402710E: operator new[](unsigned) (in /usr/lib/valgrind/x86-linux/vgpreload_memcheck.so) ==28238== by 0x677A0F9: TArrayI::Set(int) (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x6703C2D: TColor::SetPalette(int, int*) (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x6746B73: TStyle::SetPalette(int, int*) (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x67496B8: TStyle::Reset(char const*) (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x674A3AD: TStyle::TStyle(char const*, char const*) (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x674AB55: TStyle::BuildStyles() (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x673DCDF: TROOT::TROOT(char const*, char const*, void (**)()) (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x673E31D: ROOT::GetROOT() (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x6767121: TTimer::Reset() (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x6767350: TTimer::TTimer(long, bool) (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x6767A43: _GLOBAL__I_TTimer.cxx (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== ==28238== ==28238== 1,463 bytes in 2 blocks are definitely lost in loss record 147 of 203 ==28238== at 0x4027DDE: malloc (in /usr/lib/valgrind/x86-linux/vgpreload_memcheck.so) ==28238== by 0x6E7B77D: G__store_dictposition (in /home/rabbitus/ROOT/root/lib/libCint.so) ==28238== by 0x6DF2AAA: G__register_sharedlib (in /home/rabbitus/ROOT/root/lib/libCint.so) ==28238== by 0x6E82C06: G__RegisterLibrary (in /home/rabbitus/ROOT/root/lib/libCint.so) ==28238== by 0x6DEDFC6: G__call_setup_funcs (in /home/rabbitus/ROOT/root/lib/libCint.so) ==28238== by 0x6DEE211: G__main (in /home/rabbitus/ROOT/root/lib/libCint.so) ==28238== by 0x6DF046F: G__init_cint (in /home/rabbitus/ROOT/root/lib/libCint.so) ==28238== by 0x67CCAA6: TCint::ResetAll() (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x67CCC44: TCint::TCint(char const*, char const*) (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x673CC63: TROOT::TROOT(char const*, char const*, void (**)()) (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x673E31D: ROOT::GetROOT() (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x6767121: TTimer::Reset() (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== ==28238== ==28238== 2,313 bytes in 92 blocks are possibly lost in loss record 154 of 203 ==28238== at 0x40277EE: operator new(unsigned) (in /usr/lib/valgrind/x86-linux/vgpreload_memcheck.so) ==28238== by 0x9C222E3: std::string::_Rep::_S_create(unsigned, unsigned, std::allocator const&) (in /usr/lib/libstdc++.so.6.0.10) ==28238== by 0x9C2451C: std::string::_M_mutate(unsigned, unsigned, unsigned) (in /usr/lib/libstdc++.so.6.0.10) ==28238== by 0x9C246E9: std::string::_M_replace_safe(unsigned, unsigned, char const*, unsigned) (in /usr/lib/libstdc++.so.6.0.10) ==28238== by 0x9C2478F: std::string::assign(char const*, unsigned) (in /usr/lib/libstdc++.so.6.0.10) ==28238== by 0x67AB231: TClassRef::TClassRef(TClass*) (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x747EEBC: TGenCollectionProxy::TGenCollectionProxy(ROOT::TCollectionProxyInfo const&, TClass*) (in /home/rabbitus/ROOT/root/lib/libRIO.so) ==28238== by 0x74838EF: TGenCollectionStreamer::TGenCollectionStreamer(ROOT::TCollectionProxyInfo const&, TClass*) (in /home/rabbitus/ROOT/root/lib/libRIO.so) ==28238== by 0x745EB9D: TCollectionProxyFactory::GenExplicitStreamer(ROOT::TCollectionProxyInfo const&, TClass*) (in /home/rabbitus/ROOT/root/lib/libRIO.so) ==28238== by 0x745ECA8: TCollectionProxyFactory::GenExplicitClassStreamer(ROOT::TCollectionProxyInfo const&, TClass*) (in /home/rabbitus/ROOT/root/lib/libRIO.so) ==28238== by 0x7490EF3: TStreamerInfo::GenExplicitClassStreamer(ROOT::TCollectionProxyInfo const&, TClass*) (in /home/rabbitus/ROOT/root/lib/libRIO.so) ==28238== by 0x679AC21: TClass::SetCollectionProxy(ROOT::TCollectionProxyInfo const&) (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== ==28238== ==28238== 5,712 bytes in 63 blocks are possibly lost in loss record 162 of 203 ==28238== at 0x402710E: operator new[](unsigned) (in /usr/lib/valgrind/x86-linux/vgpreload_memcheck.so) ==28238== by 0x7496359: TStreamerInfo::Compile() (in /home/rabbitus/ROOT/root/lib/libRIO.so) ==28238== by 0x74985F5: TStreamerInfo::BuildOld() (in /home/rabbitus/ROOT/root/lib/libRIO.so) ==28238== by 0x74584C5: TBufferFile::ReadClassBuffer(TClass const*, void*, TClass const*) (in /home/rabbitus/ROOT/root/lib/libRIO.so) ==28238== by 0x64E6304: XUnitTreeInfo::Streamer(TBuffer&) (in /home/rabbitus/CRAN/R/myRlib/xps/libs/xps.so) ==28238== by 0x67A0A7F: TClass::Streamer(void*, TBuffer&, TClass const*) const (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x745ACFA: TBufferFile::ReadObjectAny(TClass const*) (in /home/rabbitus/ROOT/root/lib/libRIO.so) ==28238== by 0x678E356: TBuffer& operator>>(TBuffer&, TObject*&) (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x678DE66: TList::Streamer(TBuffer&) (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x67A0A7F: TClass::Streamer(void*, TBuffer&, TClass const*) const (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x745ACFA: TBufferFile::ReadObjectAny(TClass const*) (in /home/rabbitus/ROOT/root/lib/libRIO.so) ==28238== by 0x745B4BD: TBufferFile::ReadFastArray(void**, TClass const*, int, bool, TMemberStreamer*, TClass const*) (in /home/rabbitus/ROOT/root/lib/libRIO.so) ==28238== ==28238== ==28238== 424,513 bytes in 10,522 blocks are possibly lost in loss record 198 of 203 ==28238== at 0x402710E: operator new[](unsigned) (in /usr/lib/valgrind/x86-linux/vgpreload_memcheck.so) ==28238== by 0x6741AEA: TStringRef::GetRep(int, int) (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x6744CFB: TString::Replace(int, int, char const*, int) (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x67453A1: TString::operator=(char const*) (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x67B081D: TFunction::TFunction(void*) (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x67B818B: TMethod::TMethod(void*, TClass*) (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x67D0299: TCint::CreateListOfMethods(TClass*) (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x679B747: TClass::GetListOfMethods() (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x679FDA8: TClass::GetMethodAny(char const*) (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x67BED0A: TStreamerBase::Init(TObject*) (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== by 0x7497636: TStreamerInfo::BuildOld() (in /home/rabbitus/ROOT/root/lib/libRIO.so) ==28238== by 0x679B052: TClass::GetStreamerInfo(int) const (in /home/rabbitus/ROOT/root/lib/libCore.so) ==28238== ==28238== LEAK SUMMARY: ==28238== definitely lost: 3,482 bytes in 65 blocks. ==28238== indirectly lost: 890 bytes in 34 blocks. ==28238== possibly lost: 433,011 bytes in 10,680 blocks. ==28238== still reachable: 19,531,721 bytes in 67,221 blocks. ==28238== suppressed: 0 bytes in 0 blocks. ==28238== Reachable blocks (those to which a pointer was found) are not shown. ==28238== To see them, rerun with: --leak-check=full --show-reachable=yes rabbitus@linux-2zjz:~/CRAN/Workspaces/testAB>