Thanks for the answer @Wile_E_Coyote,
I still don’t get how to fix this, 
$ ls
doMyAnalysisHeavyIon.C HxSimEventDict.cxx HxSimParticle.cxx HxSimParticleDict_rdict.pcm pythia_heavy_ion_pPb.root
doMyAnalysisHeavyIon.o HxSimEventDict.o HxSimParticle_cxx_ACLiC_dict_rdict.pcm HxSimParticle.h pythia_heavy_ion_pp.root
HxSimEvent.cxx HxSimEventDict_rdict.pcm HxSimParticle_cxx.d HxSimParticleLinkDef.h pythia_HI.png
HxSimEvent_cxx_ACLiC_dict_rdict.pcm HxSimEvent.h HxSimParticle_cxx.so HxSimParticle.o
HxSimEvent_cxx.d HxSimEventLinkDef.h HxSimParticleDict.cxx Makefile
HxSimEvent_cxx.so HxSimEvent.o HxSimParticleDict.o pythia_heavy_ion_PbPb.root
Makefile:
all: libs programs
libs: HxSimParticle_cxx.so libHxSimEvent_cxx.so
programs = doMyAnalysisHeavyIon
#LHAPDF = LHAPDF-6.1.6
PYTHIA8 = /home/andre/pythia8235
HXPATH = /home/andre/pythia8235/examples/Analysis
# define compiler/linker flags
CXX = g++
CXXFLAGS = -O3 -Wall -fPIC
CXXFLAGS += $(shell root-config --cflags)
LDFLAGS = -O3 -Wl,-rpath,'$(HXPATH)'
LDFLAGS += $(shell root-config --ldflags)
SOFLAGS = -shared
ROOTLIBS = $(shell root-config --libs --glibs --evelibs)
PROGRAMS = doMyAnalysisHeavyIon
# compile/link HxSimEvent
HxSimEvent_cxx.so: HxSimEventDict.o HxSimEvent.o HxSimParticleDict.o HxSimParticle.o
$(CXX) $(SOFLAGS) $(LDFLAGS) $^ $(ROOTLIBS) -o $@
HxSimEvent.o: HxSimEvent.cxx
$(CXX) $(CXXFLAGS) -c $^ -o $@
HxSimEventDict.o: HxSimEventDict.cxx
$(CXX) $(CXXFLAGS) -c $^ -o $@
HxSimEventDict.cxx: HxSimEvent.h HxSimEventLinkDef.h
rootcint -f $@ -c $(CXXFLAGS) -p $^
# compile/link HxSimParticle
HxSimParticle_cxx.so: HxSimParticleDict.o HxSimParticle.o
$(CXX) $(SOFLAGS) $(LDFLAGS) $^ $(ROOTLIBS) -o $@
HxSimParticle.o: HxSimParticle.cxx
$(CXX) $(CXXFLAGS) -c $^ -o $@
HxSimParticleDict.o: HxSimParticleDict.cxx
$(CXX) $(CXXFLAGS) -c $^ -o $@
HxSimParticleDict.cxx: HxSimParticle.h HxSimParticleLinkDef.h
rootcint -f $@ -c $(CXXFLAGS) -p $^
# compile/link doMyAnalysisHeavyIon
doMyAnalysisHeavyIon: doMyAnalysisHeavyIon.o HxSimEvent_cxx.so HxSimParticle_cxx.so
$(CXX) $(CXXFLAGS) $(LDFLAGS) $^ $(ROOTLIBS) -o @
doMyAnalysisHeavyIon.o: doMyAnalysisHeavyIon.C
$(CXX) $(CXXFLAGS) -c $^ -o $@
.PHONY: clean distclean
# remove object files
clean:
@rm -f *.o
# remove objects, libraries and dicts
distclean: clean
@rm -f *.so *Dict.* $(PROGRAMS)
My problem is in this part:
# compile/link doMyAnalysisHeavyIon
doMyAnalysisHeavyIon: doMyAnalysisHeavyIon.o HxSimEvent_cxx.so HxSimParticle_cxx.so
$(CXX) $(CXXFLAGS) $(LDFLAGS) $^ $(ROOTLIBS) -o # Here