ACLiC problem (ROOT v5-32-01) on CentOS 6.2 x86_64 SMP

Pepe_Le_Pew · March 2, 2012, 8:15pm

I just started to use CentOS 6.2 x86_64 SMP with gcc 4.4.6.
I was able to compile ROOT v5-32-01 (except for a problem with “qtcint.so”, which I reported elsewhere).

I’ve got a strange problem, however.
I cannot precompile anything with ACLiC.
No matter what I try, I get (note: these messages look pretty much the same as these related to the “qtcint.so” building problem):

[code]root [0] .L MyClass.hxx++
Info in TUnixSystem::ACLiC: creating shared library /…/./MyClass_hxx.so
/…/MyClass_hxx_ACLiC_dict.o: In function global constructors keyed to MyClass_hxx_ACLiC_dict.cxx': MyClass_hxx_ACLiC_dict.cxx:(.text+0x2c2): undefined reference toG__add_setup_func’
MyClass_hxx_ACLiC_dict.cxx:(.text+0x2c7): undefined reference to G__call_setup_funcs' /.../MyClass_hxx_ACLiC_dict.o: In functionG__cpp_setup_tagtableMyClass_hxx_ACLiC_dict’:
MyClass_hxx_ACLiC_dict.cxx:(.text+0x2fc): undefined reference to G__get_linked_tagnum_fwd' MyClass_hxx_ACLiC_dict.cxx:(.text+0x308): undefined reference toG__get_linked_tagnum_fwd’
MyClass_hxx_ACLiC_dict.cxx:(.text+0x314): undefined reference to `G__get_linked_tagnum_fwd’

(… tons of messages …)

MyClass_hxx_ACLiC_dict.cxx:(.text+0x16c8): undefined reference to G__int' MyClass_hxx_ACLiC_dict.cxx:(.text+0x171d): undefined reference toG__double’
MyClass_hxx_ACLiC_dict.cxx:(.text+0x1787): undefined reference to G__int' MyClass_hxx_ACLiC_dict.cxx:(.text+0x17ee): undefined reference toG__int’
/…/MyClass_hxx_ACLiC_dict.o: In function G__MyClass_hxx_ACLiC_dict_3012_0_3(G__value*, char const*, G__param*, int)': MyClass_hxx_ACLiC_dict.cxx:(.text+0x193c): undefined reference toG__getgvp’
MyClass_hxx_ACLiC_dict.cxx:(.text+0x1944): undefined reference to G__getstructoffset' MyClass_hxx_ACLiC_dict.cxx:(.text+0x194c): undefined reference toG__getaryconstruct’
MyClass_hxx_ACLiC_dict.cxx:(.text+0x196b): undefined reference to G__setgvp' MyClass_hxx_ACLiC_dict.cxx:(.text+0x1984): undefined reference toG__setgvp’
MyClass_hxx_ACLiC_dict.cxx:(.text+0x198c): undefined reference to G__setnull' MyClass_hxx_ACLiC_dict.cxx:(.text+0x19c2): undefined reference toG__setgvp’
/…/MyClass_hxx_ACLiC_dict.o: In function G__setup_memfuncMyClass()': MyClass_hxx_ACLiC_dict.cxx:(.text+0x5d0): undefined reference toG__tag_memfunc_reset’
/…/MyClass_hxx_ACLiC_dict.o: In function G__cpp_setup_funcMyClass_hxx_ACLiC_dict': MyClass_hxx_ACLiC_dict.cxx:(.text+0xf2e): undefined reference toG__resetifuncposition’
/…/MyClass_hxx_ACLiC_dict.o: In function G__cpp_setup_globalMyClass_hxx_ACLiC_dict': MyClass_hxx_ACLiC_dict.cxx:(.text+0xf4e): undefined reference toG__resetglobalenv’
/…/MyClass_hxx_ACLiC_dict.o: In function G__cpp_setup_typetableMyClass_hxx_ACLiC_dict': MyClass_hxx_ACLiC_dict.cxx:(.text+0x10f3): undefined reference toG__setnewtype’
/…/MyClass_hxx_ACLiC_dict.o: In function G__cpp_setup_initMyClass_hxx_ACLiC_dict::~G__cpp_setup_initMyClass_hxx_ACLiC_dict()': MyClass_hxx_ACLiC_dict.cxx:(.text._ZN39G__cpp_setup_initMyClass_hxx_ACLiC_dictD2Ev[_ZN39G__cpp_setup_initMyClass_hxx_ACLiC_dictD5Ev]+0x8): undefined reference toG__remove_setup_func’
collect2: ld returned 1 exit status
Error in : Compilation failed![/code]
BTW. This problem does not exist on Ubuntu 10.04.4 LTS i686 SMP with gcc 4.4.3.

Pepe_Le_Pew · March 3, 2012, 10:32pm

I believe “libCint.so” is missing in two command lines, when ACLiC tries to link the shared library “MyClass_hxx.so” and the magic “MyClass_hxx_ACLiC_exec” (which I cannot locate afterwards, even if I set “gDebug = 99”): cd /... ; g++ -c -O2 -pipe -m64 -Wshadow -Wall -W -Woverloaded-virtual -fPIC -pthread -I/MyRoot/v5-32-01/include -I/MyRoot/v5-32-01/include -I/... -I/... -D__ACLIC__ /.../MyClass_hxx_ACLiC_dict.cxx ; g++ /.../MyClass_hxx_ACLiC_dict.o -shared -Wl,-soname,MyClass_hxx.so -m64 -O2 -Wl,--no-undefined /lib64/libfreebl3.so /MyRoot/v5-32-01/lib/libCore.so /MyRoot/v5-32-01/lib/libRint.so /MyRoot/v5-32-01/lib/libMathCore.so /MyRoot/v5-32-01/lib/libThread.so /MyRoot/v5-32-01/lib/libRIO.so -o /..././MyClass_hxx.so cd /... ; g++ -c -pipe -m64 -Wshadow -Wall -W -Woverloaded-virtual -fPIC -pthread -I/MyRoot/v5-32-01/include -I/MyRoot/v5-32-01/include -I/... -I/... -D__ACLIC__ /.../MyClass_hxx_ACLiC_dict.cxx; g++ /.../MyClass_hxx_ACLiC_dict.o -m64 -O2 -Wl,--no-undefined -o /.../MyClass_hxx_ACLiC_exec /lib64/libfreebl3.so /MyRoot/v5-32-01/lib/libCore.so /MyRoot/v5-32-01/lib/libRint.so /MyRoot/v5-32-01/lib/libMathCore.so /MyRoot/v5-32-01/lib/libThread.so /MyRoot/v5-32-01/lib/libRIO.so -lm -ldl -pthread -rdynamic

pcanal · March 4, 2012, 4:47pm

Hi Pepe,

What is the content of $ROOTSYS/include/compiledata.h?

Cheers,
Philippe.

Pepe_Le_Pew · March 4, 2012, 4:55pm

/* This is file is automatically generated */ #define BUILD_ARCH "linuxx8664gcc" #define BUILD_NODE "Linux My.Host.My.Domain 2.6.32-220.4.2.el6.x86_64 #1 SMP Tue Feb 14 04:00:16 GMT 2012 x86_64 x86_64 x86_64 GNU/Linux" #define COMPILER "/usr/bin/g++" #define COMPILERVERS "gcc446" #define MAKESHAREDLIB "cd $BuildDir ; g++ -c $Opt -pipe -m64 -Wshadow -Wall -W -Woverloaded-virtual -fPIC -pthread $IncludePath $SourceFiles ; g++ $ObjectFiles -shared -Wl,-soname,$LibName.so -m64 -O2 -Wl,--no-undefined $LinkedLibs -o $SharedLib" #define MAKEEXE "cd $BuildDir ; g++ -c -pipe -m64 -Wshadow -Wall -W -Woverloaded-virtual -fPIC -pthread $IncludePath $SourceFiles; g++ $ObjectFiles -m64 -O2 -Wl,--no-undefined -o $ExeName $LinkedLibs -lm -ldl -pthread -rdynamic" #define CXXOPT "-O2" #define CXXDEBUG "-g" #define ROOTBUILD "" #define LINKEDLIBS "-L$ROOTSYS/lib -lCore -lCint -lRint " #define INCLUDEPATH "-I$ROOTSYS/include" #define OBJEXT "o" #define SOEXT "so"

pcanal · March 5, 2012, 12:05am

Hi,

I don’t see any good reason why libCint is not being listed in the ACLiC command line … What does gSystem->GetLibraries("") returns?

Cheers,
Philippe.

Pepe_Le_Pew · March 5, 2012, 8:36am

root [0] gSystem->GetLibraries("")
(const char* 0x13f0f40)"/lib64/libfreebl3.so /opt/ROOT/CentOS62_x86_64_gcc446/root/v5-32-01/lib/libCore.so /opt/ROOT/CentOS62_x86_64_gcc446/root/v5-32-01/lib/libRint.so /opt/ROOT/CentOS62_x86_64_gcc446/root/v5-32-01/lib/libMathCore.so"

pcanal · March 5, 2012, 3:59pm

Hi Pepe,

And what doesldd $ROOTSYS/bin/root.exe returns (I.e. the protected method TUnixSystem::GetLinkedLibraries seems to not returns the right information on this platform).

Philippe.

Pepe_Le_Pew · March 5, 2012, 4:36pm

-bash-4.1$ export|grep ROOTSYS declare -x ROOTSYS="/opt/ROOT/CentOS62_x86_64_gcc446/root/v5-32-01" -bash-4.1$ ldd $ROOTSYS/bin/root.exe linux-vdso.so.1 => (0x00007fff28fe7000) libCore.so.5.32 => /opt/ROOT/CentOS62_x86_64_gcc446/root/v5-32-01/lib/libCore.so.5.32 (0x00007fe4ec696000) libCint.so.5.32 => /opt/ROOT/CentOS62_x86_64_gcc446/root/v5-32-01/lib/libCint.so.5.32 (0x00007fe4ebd15000) libRint.so.5.32 => /opt/ROOT/CentOS62_x86_64_gcc446/root/v5-32-01/lib/libRint.so.5.32 (0x00007fe4ebae1000) libdl.so.2 => /lib64/libdl.so.2 (0x0000003425200000) libstdc++.so.6 => /usr/lib64/libstdc++.so.6 (0x0000003428200000) libm.so.6 => /lib64/libm.so.6 (0x0000003424a00000) libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x0000003427600000) libpthread.so.0 => /lib64/libpthread.so.0 (0x0000003424e00000) libc.so.6 => /lib64/libc.so.6 (0x0000003424600000) libz.so.1 => /lib64/libz.so.1 (0x0000003425a00000) libpcre.so.0 => /lib64/libpcre.so.0 (0x0000003429a00000) libcrypt.so.1 => /lib64/libcrypt.so.1 (0x0000003427e00000) /lib64/ld-linux-x86-64.so.2 (0x0000003424200000) libfreebl3.so => /lib64/libfreebl3.so (0x0000003427a00000)

pcanal · March 5, 2012, 6:23pm

Hi Pepe,

This is actually linked so the --enable-soversion. Can you please submit a savannah report on this issue?

Thanks,
Philippe.

Pepe_Le_Pew · March 5, 2012, 6:54pm

Here’s the “config.log” extract:
Enabled support for afdsmgrd, asimage, astiff, builtin_afterimage, builtin_ftgl, builtin_glew, builtin_lzma, cintex, exceptions, explicitlink, fftw3, gdml, genvector, gsl_shared, krb5, mathmore, memstat, minuit2, mysql, opengl, python, qt, qtgsi, reflex, roofit, shadowpw, shared, soversion, ssl, table, tmva, unuran, x11, xft, xml.

I don’t have any account on your Savannah, so maybe it would be good if you created an appropriate entry there.

pcanal · March 5, 2012, 8:17pm

Hi Pepe,

Given your very helpful involvement, I recommend that you create an account on savannah, which is quite easy (see savannah.cern.ch/account/register.php). This will enhance the tracking of some the issues you finding along the way .

Thanks,
Philippe.

Pepe_Le_Pew · March 5, 2012, 8:42pm

I feel I’d like to report another problem here …
I tried another machine … Ubuntu 10.04.4 LTS i686 SMP, gcc 4.4.3.
The ‘$ROOTSYS/include/compiledata.h’ contains:
#define LINKEDLIBS “-L$ROOTSYS/lib -lCore -lCint -lRint “
but the 'gSystem->GetLibraries(””)’ returns:
(const char* 0x855ae98)"-lRint -lCint -lCore -L$ROOTSYS/lib /opt/ROOT/Ubuntu1004_gcc443/root/v5-32-01/lib/libCore.so /opt/ROOT/Ubuntu1004_gcc443/root/v5-32-01/lib/libRint.so /opt/ROOT/Ubuntu1004_gcc443/root/v5-32-01/lib/libMathCore.so"
Don’t you think that the ‘-L$ROOTSYS/lib’ flag is in a completely wrong place?
This bug is present at least in ROOT 5.28, 5.30 and 5.32.

pcanal · March 5, 2012, 8:54pm

[quote]Don’t you think that the ‘-L$ROOTSYS/lib’ flag is in a completely wrong place?
[/quote]Yes that seems awkward (and actually now somewhat unnecessary since the library are listed with their full pathname.

Philippe.

Pepe_Le_Pew · March 5, 2012, 9:31pm

The ‘libCint.so’ is NOT there (and there’s an additional ‘libMathCore.so’).

pcanal · March 7, 2012, 9:25pm

Hi Pepe,

The problem with --enable-soversion seems to be on all platforms …

Philippe.

nmihai · March 15, 2012, 8:31am

I had the same problem on SLC5 X86_64 SMP using ROOT 5.32/01 when I am trying to compile macros with ACLIC.

I found that doing: gSystem->Load(“libCint”) compiles without problems.

Cheers,
Mihai

Pepe_Le_Pew · March 28, 2012, 11:34am

The problem still exists in the newest ROOT v5-32-02.
As suggested by Philippe, removing the recommended “–enable-soversion” flag (when running the “configure” step) helps.

rdm · March 30, 2012, 4:11pm

Hi,

this issue should be fixed in the trunk, soversion’ed ROOT build will work with ACliC.

Cheers, Fons.

Pepe_Le_Pew · April 2, 2012, 5:09pm

According to some message (that I found elsewhere, don’t remember where), v5-32 is the last version that supports gcc 3.4 (and another gcc 3.x compilers). Would it be possible that you increase the “level of maintenance” for it?